DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment repo and Drgx

DIOPT Version :10

Sequence 1:NP_477026.1 Gene:repo / 47285 FlyBaseID:FBgn0011701 Length:612 Species:Drosophila melanogaster
Sequence 2:XP_006518472.1 Gene:Drgx / 107751 MGIID:2148204 Length:354 Species:Mus musculus


Alignment Length:137 Identity:55/137 - (40%)
Similarity:72/137 - (52%) Gaps:32/137 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   303 KKKKTRTTFTAYQLEELERAFERAPYPDVFAREELAIKLNLSESRVQVWFQNRRAKWRK------ 361
            |:::.|||||..|||.||..|.:..|||||.|||||:|:||:|:|||||||||||||||      
Mouse   123 KQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRKTERGAS 187

  Fly   362 -HEPPRKTGYIKTSTPPTATLN---PG------------------TLAPPFTSYPQTTTVTPPGS 404
             .||..|....:.:.||...:|   ||                  |:.|....:|...    ||:
Mouse   188 DQEPGAKEPMAEVTPPPVRNINSPPPGDQTRSKKEALEAQQSLGRTVGPTGPFFPSCL----PGT 248

  Fly   405 MDSWTSY 411
            :.:..:|
Mouse   249 LLNTATY 255

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
repoNP_477026.1 Homeodomain 313..361 CDD:459649 33/47 (70%)
DrgxXP_006518472.1 Homeodomain 125..181 CDD:459649 38/55 (69%)
OAR 292..309 CDD:461067
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.