DRSC/TRiP Functional Genomics Resources

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Protein Alignment repo and vsx2

DIOPT Version :10

Sequence 1:NP_477026.1 Gene:repo / 47285 FlyBaseID:FBgn0011701 Length:612 Species:Drosophila melanogaster
Sequence 2:XP_004917101.1 Gene:vsx2 / 100493176 XenbaseID:XB-GENE-853775 Length:377 Species:Xenopus tropicalis


Alignment Length:186 Identity:61/186 - (32%)
Similarity:80/186 - (43%) Gaps:63/186 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   238 GAGVTPPSSSSTVVNGTTNGTGNANSSSSAGVGIQGAAG-------------------------T 277
            |....||:.|...::..:.||...  ::.:|:|:..|.|                         .
 Frog    23 GLNKEPPTPSQRHLHPLSPGTHLL--AARSGLGLLAAGGIPTFYTQPGLLLGDPPGPRIQQTGQE 85

  Fly   278 AGGVAAPAAKKDGSSSKKKGDPNGI----KKKKT------------------------------- 307
            .|.....:..:|.|||.:| .|..:    |:||.                               
 Frog    86 EGSRTCSSDSEDVSSSDRK-LPKSLSQSKKRKKRRHRYPNIMFEGNRPKIKFGVFTGNKGAIRSF 149

  Fly   308 RTTFTAYQLEELERAFERAPYPDVFAREELAIKLNLSESRVQVWFQNRRAKWRKHE 363
            ||.||:|||||||:||..|.||||:|||.||:|..|.|.|:|||||||||||||.|
 Frog   150 RTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKRE 205

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
repoNP_477026.1 Homeodomain 313..361 CDD:459649 34/47 (72%)
vsx2XP_004917101.1 Homeodomain 147..203 CDD:459649 38/55 (69%)
OAR 318..336 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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