Protein Alignment repo and arx

DIOPT Version :10

• Sequence 1: NP_477026.1
• Gene: repo / 47285
• FlyBaseID: FBgn0011701
• Length: 612
• Species: Drosophila melanogaster
• Sequence 2: XP_002933659.1
• Gene: arx / 100486727
• XenbaseID: XB-GENE-483940
• Length: 536
• Species: Xenopus tropicalis
• Alignment Length: 498
• Identity: 126/498 - (25%)
• Similarity: 181/498 - (36%)
• Gaps: 160/498 - (32%)

  Fly    45 LCSQQQQQQQQQRLPDCNTILPNGGGGGAGSGGAGGSPNYVTKLDFVNKMGCYSPSQKYEYISAP 109
            |..|.|||.|......|.::                          .:::|..|.|.:.|.....
 Frog   164 LLQQSQQQIQTSATTACTSL--------------------------QDRLGALSQSPRDEDDDDE 202

  Fly   110 QKLVEQQQQQQH---HHQHHQHYTATPPPSHNGILLHKQSSQQQQQQQQQLVGILDYHPLNGKLD 171
            :...|::::::.   :.||:.:.::.|..:|.....|.|...||.||||...|.
 Frog   203 EDEDEEEEEEEEDEANKQHNPNNSSNPNRAHLQEQQHPQFQSQQSQQQQPPPGC----------- 256

  Fly   172 YSSSPKDQYEPQQLQHLYGGSPHHLDHLDHGSDGLLQDSSPVMINGGSAGGKLKKPDEMCSQLEA 236
                                          |:|..|.....:|::...|.|| ...|.:|  |.|
 Frog   257 ------------------------------GTDAELSPKEELMLHSSDADGK-DGEDSVC--LSA 288

  Fly   237 GGAGVTPPSSSSTVVNGTTNGTGNANSSSSAGVGIQGAAGTAGGVAAPAAKKDGSSSKKKGDPNG 301
            |                         |.|..|:                .|:
 Frog   289 G-------------------------SDSEEGM----------------LKR------------- 299

  Fly   302 IKKKKTRTTFTAYQLEELERAFERAPYPDVFAREELAIKLNLSESRVQVWFQNRRAKWRKHEPPR 366
             |:::.|||||:||||||||||::..|||||.|||||::|:|:|:|||||||||||||||.|
 Frog   300 -KQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKRE--- 360

  Fly   367 KTGYIKTSTPPTATLNPGTLAPPFTSYPQTTTVTP--PGSMDSWTSYQTPY-----ELTPQ---F 421
            |.| .:|..|......|.:.:.|...|...:...|  |....:||:.....     .|.|.   .
 Frog   361 KAG-AQTHAPGLPFPGPLSASHPLGPYLDASPFPPHHPALDSAWTAAAAAAAAAFPSLPPPPHGS 424

  Fly   422 SLLSPAASPYGTYSGQYGAYVHESQLFPMRHYEYGSP-------TRMEMGATTGSVAGNGDESVA 479
            :.|.|:.||.| .|...||.|       .||..:.||       |...:.:.:.:.|.....|.|
 Frog   425 AALPPSGSPLG-LSTFLGAAV-------FRHPAFISPAFGRLFSTMAPLTSASTAAALLRQPSPA 481

  Fly   480 NGGSYQTAELQ---TAQQQQLADGTLVTVHAHQQQQQQQQQLN 519
            ...|.|::.|.   ||...:.|..........::...|..|||
 Frog   482 VESSVQSSGLSDPVTAAADRRASSIAALRLKAKEHAAQLTQLN 524

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
repo	NP_477026.1	Homeodomain	313..361	CDD:459649	36/47 (77%)
arx	XP_002933659.1	Homeodomain	302..358	CDD:459649	41/55 (75%)
		OAR	500..518	CDD:461067	1/17 (6%)