DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment repo and rax

DIOPT Version :9

Sequence 1:	NP_477026.1	Gene:	repo / 47285	FlyBaseID:	FBgn0011701	Length:	612	Species:	Drosophila melanogaster
Sequence 2:	XP_002936715.1	Gene:	rax / 100038124	XenbaseID:	XB-GENE-492665	Length:	326	Species:	Xenopus tropicalis

Alignment Length:	263	Identity:	87/263 - (33%)
Similarity:	122/263 - (46%)	Gaps:	47/263 - (17%)

- Green bases have known domain annotations that are detailed below.

  Fly   190 GGSPHHLDHLDHGSDGLLQDSSPVMINGG----SAGGKLKKPDEMCSQ--LEAGGAGVTPPSSSS 248
            ||:|..|    |..:.:|..|....:.|.    .:....|:.|:..|:  |......:.|  ...
Frog    25 GGNPSRL----HSIEAILGFSKEDSVLGSFQTEVSPRNAKEVDKRSSRHCLHKMTEEIHP--QQE 83

  Fly   249 TVVNGTTNGTGNANSSSSAGVGIQGAAGTAGGVAAPAAKKDGSSSKKKGDPNGIKKKK---TRTT 310
            .:.:|.::|.|:..|..           |:....:|......:|..|..|.....|||   .|||
Frog    84 HLEDGQSDGYGDPYSGK-----------TSSECLSPGLSTSNNSDNKLSDDEQQPKKKHRRNRTT 137

  Fly   311 FTAYQLEELERAFERAPYPDVFAREELAIKLNLSESRVQVWFQNRRAKWRKHEPPRKTGYIKTST 375
            ||.|||.|||||||::.||||::|||||:|:||.|.||||||||||||||:.|....|. :|...
Frog   138 FTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEKLEVTS-MKLQD 201

  Fly   376 PPTATLN----PGTLAPPFTSYPQTTTVTPPGSMDSW----TSYQTPYELTPQFSLLSPAASPYG 432
            .|..:.|    |..::...:|.|          :|||    .|..|..:..|.| :.||.:.| |
Frog   202 SPILSFNRSPQPSAMSAISSSLP----------LDSWLTPSISNSTALQSLPGF-VTSPPSLP-G 254

  Fly   433 TYS 435
            :|:
Frog   255 SYT 257

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
repo	NP_477026.1	Homeobox	313..360	CDD:278475	35/46 (76%)
rax	XP_002936715.1	Homeobox	135..188	CDD:365835	41/52 (79%)
rax	XP_002936715.1	OAR	299..315	CDD:367680
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0000011
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.910