DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment l(3)05822 and LSB3

DIOPT Version :9

Sequence 1:NP_001262702.1 Gene:l(3)05822 / 47260 FlyBaseID:FBgn0010877 Length:600 Species:Drosophila melanogaster
Sequence 2:NP_219497.4 Gene:LSB3 / 850580 SGDID:S000002968 Length:459 Species:Saccharomyces cerevisiae


Alignment Length:488 Identity:106/488 - (21%)
Similarity:163/488 - (33%) Gaps:163/488 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   135 LVNGQNMTKSNSSMASAVTGGTGRLMSNIFHRKKSTSTASAAASKAA--AENRVYGLSSGNAGAT 197
            ::|.|:..||.|...:...||...:.:....|....:.:::|...||  |.::..||.:|     
Yeast   106 ILNTQDAVKSFSEFGTITLGGNVSVSAGPLGRSAEAAASASAGGVAAVFAYSKSKGLFAG----- 165

  Fly   198 PSNNSSSSASSAAFSNVDWNAAWNTATTTTTTTSSSSHSSHYASQQTADAQLISFDSPPSS--PT 260
                 .|...||.....:.|..:                  |....||...|.....||.:  |.
Yeast   166 -----VSVEGSAIIERREANRKF------------------YGDNCTAKMILSGRIRPPPAVDPL 207

  Fly   261 FTQKSNSDCVSVDSFSSDSNFSSPNNGSVSQPESGF--EDDYHRSRPSTQSPLDPWEAVDSVGLG 323
            |.        .::|.:.:...|:...||....|..:  :|||:...||:.|              
Yeast   208 FR--------VLESRAFNYRPSNGGRGSFDDDEDDYYDDDDYYNDIPSSFS-------------- 250

  Fly   324 GVDSFGSAP-VRQTYQVQSRGS---------DNPLCNG---KSLLPPTQSLTMPTIIKPKISQKP 375
            ..|:..:.| .|.|.:....||         |:....|   .|.|.||.|               
Yeast   251 STDASSTRPNTRSTRRRAQSGSRYTFDDDDDDDDYGTGYSRNSRLAPTNS--------------- 300

  Fly   376 KAPKPPPFIGGHL--PPGYSIPSGYAGSETPPSPPMPKGPPPPPPPASSGGISLLDVINGKVDAL 438
                  ...||.|  |.|.|  |.||....                            :|...:.
Yeast   301 ------GGSGGKLDDPSGAS--SYYASHRR----------------------------SGTAQSR 329

  Fly   439 ALSNGCQGYMEEEVVPYAVALYDFDGIEPGDLSFREGEKIYLLDHPTPEWLRGRTRSGCEGIFPI 503
            |.|:. ..:.::|...|.      |..|.|   :|.|              .||.|:....:..:
Yeast   330 ARSSR-NRWADDEYDDYD------DDYESG---YRRG--------------NGRDRTKDREVDDL 370

  Fly   504 N--YVDIKVPLGAT----GGAAAAPTASAAAPSPSPSQQQLPTALCLYHFPGEVEGDLALQENEL 562
            :  :...::...:|    .|...|||      |||.|.   |.|:.||.|.||..|||..::.::
Yeast   371 SNRFSKSRISSASTPQTSQGRFTAPT------SPSTSS---PKAVALYSFAGEESGDLPFRKGDV 426

  Fly   563 VTVLYRIN--EDWLYGEVAGRQGQFPANFLDQV 593
            :|:|.:.:  .||..|.|.||:|.||||:::.|
Yeast   427 ITILKKSDSQNDWWTGRVNGREGIFPANYVELV 459

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(3)05822NP_001262702.1 SH3 452..506 CDD:214620 9/55 (16%)
SH3 540..591 CDD:302595 22/52 (42%)
LSB3NP_219497.4 SYLF 1..219 CDD:225482 28/148 (19%)
SH3_Ysc84p_like 404..458 CDD:212776 22/53 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm46655
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

Return to query results.
Submit another query.