DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(3)05822 and POSH

DIOPT Version :10

Sequence 1:NP_652051.1 Gene:l(3)05822 / 47260 FlyBaseID:FBgn0010877 Length:600 Species:Drosophila melanogaster
Sequence 2:NP_523776.1 Gene:POSH / 36990 FlyBaseID:FBgn0040294 Length:838 Species:Drosophila melanogaster


Alignment Length:201 Identity:55/201 - (27%)
Similarity:84/201 - (41%) Gaps:45/201 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   400 GSETPPSPPMPKGPPPPPPPASSGGISLLDVINGKVDALALSNGCQGYMEEE------VVPYAVA 458
            |.||...|...|    |.|||.|       |.......|.|.:..|.:....      ::|:|.|
  Fly    89 GEETETQPERAK----PQPPAES-------VAPPDNQLLQLQSHQQSHQPARHKQRRFLLPHAYA 142

  Fly   459 LYDFDGIEPGDLSFREGEKIYLLDHPTPEWLRGRTRSGCEGIFPINYVDIKVPLGATGGAAAAPT 523
            |:||...|..||.|::|:.|.:.......|..|:. :|.||.||||||.:.|||           
  Fly   143 LFDFASGEATDLKFKKGDLILIKHRIDNNWFVGQA-NGQEGTFPINYVKVSVPL----------- 195

  Fly   524 ASAAAPSPSPSQQQLPTALCLYHF---PGEVEGDLALQENELVTVLYRINEDWLYGEVAGRQGQF 585
                         .:|..:.:|.|   |.:.||.|..:::.::.|:.|::.:|..|.:....|.|
  Fly   196 -------------PMPQCIAMYDFKMGPNDEEGCLEFKKSTVIQVMRRVDHNWAEGRIGQTIGIF 247

  Fly   586 PANFLD 591
            |..|::
  Fly   248 PIAFVE 253

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(3)05822NP_652051.1 SH3 452..506 CDD:214620 21/53 (40%)
SH3 540..591 CDD:473055 14/53 (26%)
POSHNP_523776.1 RAD18 6..>113 CDD:227719 11/34 (32%)
RING-HC_SH3RF3 8..53 CDD:438408
SH3 139..191 CDD:473055 22/52 (42%)
SH3_SH3RF_2 199..251 CDD:212721 13/51 (25%)
SH3_SH3RF_3 424..477 CDD:212717
SH3_SH3RF_C 782..836 CDD:212719
Blue background indicates that the domain is not in the aligned region.

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