DRSC/TRiP Functional Genomics Resources

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Protein Alignment SrpRalpha and AT5G66970

DIOPT Version :10

Sequence 1:NP_524887.2 Gene:SrpRalpha / 47251 FlyBaseID:FBgn0010391 Length:614 Species:Drosophila melanogaster
Sequence 2:NP_201498.2 Gene:AT5G66970 / 836831 AraportID:AT5G66970 Length:175 Species:Arabidopsis thaliana


Alignment Length:164 Identity:35/164 - (21%)
Similarity:64/164 - (39%) Gaps:23/164 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   283 AEEQVQSKKGKRGGLLSYFKGIVGAKTMSLADLQPALEKMRDHLISKNV----ASEIAAKLCDSV 343
            |.|:|:.:.|:.      |:.:.....|....|:..|.::...|:..::    ..||..|..:.:
plant     2 ALEEVRGRIGRS------FEEMNKTSNMDCTKLKSCLNEITCALLDADIPRLAVDEIETKSLEII 60

  Fly   344 AASLDGKQMGTFDSIASQVKEALTESLVRILSPKRRIDIIRDALESKRNGRPYTIIFCGVNGVGK 408
            ......|:.|..      :...:.:.|...|.|.:.. :||..||      |..::|.|:.||.|
plant    61 NLPKAPKKKGAL------IYMMMLQELSSKLDPGKSA-LIRGKLE------PSIVMFIGLRGVDK 112

  Fly   409 STNLAKICFWLIENDFNVLIAACDTFRAGAVEQL 442
            :...||...:..:..|...:...|||:..|..:|
plant   113 TKTCAKYARYHRKKGFRPALVCADTFKFDAFVRL 146

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SrpRalphaNP_524887.2 SRP-alpha_N 28..267 CDD:461165
FlhF <258..500 CDD:274609 35/164 (21%)
SRalpha_C 396..612 CDD:349785 13/47 (28%)
AT5G66970NP_201498.2 SRP54_euk 3..>160 CDD:273615 34/163 (21%)
Blue background indicates that the domain is not in the aligned region.

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