DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SrpRalpha and AT4G30600

DIOPT Version :9

Sequence 1:NP_524887.2 Gene:SrpRalpha / 47251 FlyBaseID:FBgn0010391 Length:614 Species:Drosophila melanogaster
Sequence 2:NP_001329356.1 Gene:AT4G30600 / 829183 AraportID:AT4G30600 Length:634 Species:Arabidopsis thaliana


Alignment Length:669 Identity:283/669 - (42%)
Similarity:395/669 - (59%) Gaps:90/669 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MLDFVVIFTKGGVVLWHSNASGNSF-ASCINSLIRGVILEERNTEAKY-YEEDHLAVQFK--LDN 61
            ||:.::|||:||::||.....||:. .|.|::|||..:||||:....: |:....|...|  ..|
plant     1 MLEQLLIFTRGGLILWTCKEIGNALKGSPIDTLIRSCLLEERSGAVSFNYDAPGAAYTLKWTFHN 65

  Fly    62 ELDLVYAAIFQKVIKLNYLDGFLADMQAAFKEKYGDIRLGDDYDFDREYRRVLSAAEEAS----- 121
            :|.||:.|::|:::.|.|:|..|:.::.:|.|.|...|:..| |||..:|::...||..:     
plant    66 DLGLVFVAVYQRILHLLYVDDLLSMVKQSFSEVYDPKRMAYD-DFDETFRQLRIEAEARAEELRK 129

  Fly   122 AKQVKAP-------------------KTMRSYNESQK------SKKTVASM----------IQDD 151
            .|||..|                   |.:.|...|:|      :|..|:::          ::||
plant   130 TKQVGKPVTSVKKQGQVSKPGLEGGNKRVSSEGGSKKDDGDGGNKAKVSTLTNGHSNGNHQMEDD 194

  Fly   152 KKPVEKRVNIQEAPPPSKSQPSSPPTGSPMDKIIMEKRRKLREK----LTPTKKTSPSDSKSSK- 211
            .:......|       .|...||...      :.:.|.:|||.|    ....:||....:|||| 
plant   195 SQETNDLAN-------GKENTSSNVA------VDLSKLQKLRSKGVRGRGGVRKTDSIGNKSSKV 246

  Fly   212 ---PEKAGKKPRVWDLGGNSKDAALLDRSRDSPDDVQYQNINS--ELVGTMQG-VIRDLDVESED 270
               .:||.||.||||      |||......|..|.:.....|.  ::|...|| .:.|.:.....
plant   247 AEPAKKATKKNRVWD------DAAPKQSKLDFTDSIDENGNNDHVDIVAADQGESMMDKEEVFSS 305

  Fly   271 EADNEDASSEGEAEEQVQSKKGKRGGLLSYFKGIVGAKTMSLADLQPALEKMRDHLISKNVASEI 335
            ::::||....|..|:..|:|  |:|...|.|:.|.|...:...||.|||:.:::.|::||||.||
plant   306 DSESEDDDEPGSDEKPAQAK--KKGWFSSVFQSITGKANLERTDLGPALKALKERLMTKNVAEEI 368

  Fly   336 AAKLCDSVAASLDGKQMGTFDSIASQVKEALTESLVRILSPKRRIDIIRDALESKRNGRPYTIIF 400
            |.|||:||.|||:||::.:|..|:|.|:.|:.::|||||:|:|.|||:||...:|...:||.::|
plant   369 AEKLCESVEASLEGKKLSSFTRISSTVQAAMEDALVRILTPRRSIDILRDVHAAKEQRKPYVVVF 433

  Fly   401 CGVNGVGKSTNLAKICFWLIENDFNVLIAACDTFRAGAVEQLRTHTRHLNALHPAAKHDGRNMVQ 465
            .|||||||||||||:.:||.::..:|::|||||||:|||||||||.|.|             .:.
plant   434 VGVNGVGKSTNLAKVAYWLQQHKVSVMMAACDTFRSGAVEQLRTHARRL-------------QIP 485

  Fly   466 LYEKGYGKDAAGIAMEAIKFAHDTRVDVVLVDTAGRMQDNEPLMRSLSKLIKVNNPDLVLFVGEA 530
            ::||||.||.|.:|.|||:.|.....|||||||||||||||||||:|||||.:|.||||||||||
plant   486 IFEKGYEKDPAVVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLINLNQPDLVLFVGEA 550

  Fly   531 LVGNEAVDQLVKFNQSLADYSSNENPHIIDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQ 595
            ||||:|||||.||||.|:|.|::.||.:||||:||||||||||||||:||.||:|.|::|||.||
plant   551 LVGNDAVDQLSKFNQKLSDLSTSGNPRLIDGILLTKFDTIDDKVGAALSMVYISGSPVMFVGCGQ 615

  Fly   596 TYADLKAINVNAVVNSLMK 614
            :|.|||.:||.|:|.:|:|
plant   616 SYTDLKKLNVKAIVKTLLK 634

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SrpRalphaNP_524887.2 SRP-alpha_N 27..268 CDD:282006 78/294 (27%)
PRK14974 258..613 CDD:237875 195/355 (55%)
SRP54_N 299..374 CDD:214941 35/74 (47%)
SRP 396..592 CDD:239389 126/195 (65%)
AT4G30600NP_001329356.1 SRP-alpha_N 28..301 CDD:397968 78/292 (27%)
SRP54_N 330..399 CDD:397149 31/68 (46%)
SRalpha_C 441..632 CDD:349785 130/203 (64%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 278 1.000 Domainoid score I406
eggNOG 1 0.900 - - E1_COG0552
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2364
Inparanoid 1 1.050 454 1.000 Inparanoid score I382
OMA 1 1.010 - - QHG53679
OrthoDB 1 1.010 - - D804839at2759
OrthoFinder 1 1.000 - - FOG0005144
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100631
Panther 1 1.100 - - LDO PTHR43134
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2595
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.840

Return to query results.
Submit another query.