DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RpS14b and rps11

DIOPT Version :10

Sequence 1:NP_536352.1 Gene:RpS14b / 47219 FlyBaseID:FBgn0004404 Length:151 Species:Drosophila melanogaster
Sequence 2:NP_051091.1 Gene:rps11 / 844726 -ID:- Length:138 Species:Arabidopsis thaliana


Alignment Length:119 Identity:40/119 - (33%)
Similarity:58/119 - (48%) Gaps:9/119 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 GVAHIYASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITAL 93
            ||.|:.||||:|.|.|||:.||.......|....:..| ..:|:||..||.:........|:...
plant    28 GVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTR-RGTPFAAQTAAGNAIRAVVDQGMQRA 91

  Fly    94 HIKLRATGGNKTKTPGPGAQSALRALARSSMKIGRIEDVTPIPSDSTRRKGGRR 147
            .:::        |.||.|..:||||:.||.:.:..:.||||:|.:..|....||
plant    92 EVRI--------KGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGCRPPKKRR 137

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpS14bNP_536352.1 PTZ00129 1..140 CDD:185465 37/110 (34%)
rps11NP_051091.1 rps11 15..130 CDD:176982 37/110 (34%)

Return to query results.
Submit another query.