DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PolZ1 and pold1

DIOPT Version :10

Sequence 1:NP_524881.2 Gene:PolZ1 / 47186 FlyBaseID:FBgn0002891 Length:2130 Species:Drosophila melanogaster
Sequence 2:NP_001034899.1 Gene:pold1 / 556456 ZFINID:ZDB-GENE-060429-1 Length:1105 Species:Danio rerio


Alignment Length:972 Identity:260/972 - (26%)
Similarity:411/972 - (42%) Gaps:196/972 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly  1207 GKSRLKRGTRLSFIGSQDEEPPSSQSSEQ--------SVSSSAAQAELDRSSFLRQLEGSSQDRQ 1263
            ||.:|:...|   .|..|.:.|...|..|        |:.|..|:.|..|.:.||.         
Zfish   264 GKYQLREERR---EGQTDSKYPGKVSLCQYEVDVAWDSLISHPAEGEWQRIAPLRV--------- 316

  Fly  1264 HDLSFGLSHATLDNTFGFKVNLENLQQAKADIDCNHLTIITLEVFVSTRGDLQPDPMHDEIRCLF 1328
              |||.:..|.....|           .:.::|    .:|.:...|..:|:.:|     .||.:|
Zfish   317 --LSFDIECAGRKGVF-----------PEPEVD----PVIQIASMVQRQGEKEP-----FIRTVF 359

  Fly  1329 YAIEHSLPDEKLPSKACGYIMVNTVQDLLSEGPFHGIDRDIEVQVVTSEAEAFEALLALCERW-- 1391
                                   |:|...|              :|.|:...|.....:.:.|  
Zfish   360 -----------------------TLQSCAS--------------IVGSQILCFTQEKLMLQSWAE 387

  Fly  1392 -----DADIYAGYEIEMSSWGYVIDRAKHLCFNIAPLLSRV----PTQKVRDFVDEDREQFTDLD 1447
                 |.||..||.|:.....|:::||..|..|:.|.|.||    ...|...|..:...:..:..
Zfish   388 FMRTVDPDIITGYNIQNFDLPYLLNRAATLKVNMFPYLGRVWGCKSVLKDSSFQSKQMGRRENKT 452

  Fly  1448 VEMKLCGRILLDVWRLMRSEIALTSYTFENVMYHILHKRCPWHTAKSLTE-WFGSPCTRWIVMEY 1511
            :.|:  ||:..|:.:::..:..|.|||...|.:|.|.::........:|: ..|:..||..:..|
Zfish   453 INME--GRVQFDLLQVLLRDYKLRSYTLNAVSFHFLQEQKEDVQHSIITDLQNGNEQTRRRLAVY 515

  Fly  1512 YLERVRGTLTLLDQLDLLGRTSEMAKLIGIQFYEVLSRGSQFRVESMMLRIAKPKNLVPLSPSVQ 1576
            .|:.....|.||.:|..:....|||::.|:....:||||.|.:|.|.:||.|..::||  .|.|:
Zfish   516 CLKDAYLPLRLLQKLMCVINYMEMARVTGVPLTYLLSRGQQIKVVSQLLRQAMKQDLV--MPVVK 578

  Fly  1577 ARAHMRAPEYL-ALIMEPQSRFYADPLIVLDFQSLYPSMIIAYNYCFSTCL--GRVEHLGGSSPF 1638
            ...   ..:|. |.::||:..:|:.|:..|||.|||||:::|:|.|::|.|  .::|.||     
Zfish   579 TEG---GEDYTGATVIEPEKGYYSVPIATLDFSSLYPSIMMAHNLCYTTLLQKSQIEKLG----- 635

  Fly  1639 EFGASQLRVSRQMLQKLLEHDLVTVSPCGVVFVKREVREGILPRMLTEILDTRQMVKQSMKLHKD 1703
                             |..|....:|.|.:|||..||:|:||.:|..:|..|:..|..:|...|
Zfish   636 -----------------LGPDDFIKTPTGDLFVKSSVRKGLLPEILENLLSARKRAKAELKKETD 683

  Fly  1704 SSALQRILHSRQLGLKLMANVTYGYTAANFSGRMPSVEVGDSVVSKGRETLERAIKLVE------ 1762
            ....| :|..|||.||:.||..||:|.|.. |::|.:|:..||...||:.:|:..:|||      
Zfish   684 PFKKQ-VLDGRQLALKISANSVYGFTGAQV-GKLPCLEISQSVTGFGRQMIEQTKQLVESRYTLD 746

  Fly  1763 NNEEWKVRVVYGDTDSMFVLVPGRNRAEAFRIGEEIAKAVTEMNPQPVKLKLEKVYQPCMLQTKK 1827
            |..:...:|:||||||:.|.:......||...|:|.|:.|:.....|:||:.||||.|.:|..||
Zfish   747 NGYQADAKVIYGDTDSVMVKLGVATVQEAMNQGKEAAEWVSSHFVPPIKLEFEKVYYPYLLINKK 811

  Fly  1828 RYVGYMYETADQEQPVYEAKGIETVRRDGCPAVAKMLEKVLRILFETQDVSKIKAYVCRQFTKLL 1892
            ||.|..:.::.:.....:.|||||||||.||.||.::...|:.:...:|......:.....:.||
Zfish   812 RYAGLYFSSSAEHHDKMDCKGIETVRRDNCPLVANLINTCLQNILIDRDPDGAVTHAKEVISDLL 876

  Fly  1893 SGRANLQDLIF-------AKEFRGLNGYKPTACVPALELTRKWMQKDPRHVPRRGERVPFIIVNG 1950
            ..|.::..|:.       |:|:.|...:        :||..:..::|....|..|:|||::|:..
Zfish   877 CNRIDISQLVITKELTRTAQEYAGKQAH--------VELAERMRKRDAGSAPNLGDRVPYVIIKA 933

  Fly  1951 PPGMQLIRLVRSPHDILANEGHKINAIYYITKAIIPPLNR------------CLLLIGANVHDWF 2003
            ..|:........|..:|.| ...|:..||:.:.:..||.|            .:||.|.:..   
Zfish   934 AKGVAAYMKSEDPIYVLEN-NIPIDTQYYLEQQLSKPLLRIFEPILGESKAESVLLKGDHTR--- 994

  Fly  2004 ASLPRKLLMTPAVGTANELAGARGAKSTISQYFSTTSCVIDCGR--QTKAGICPDCLKNATTC-- 2064
                .|.::|..||.....|..|             |..|.|..  :|...:|..|.|..:..  
Zfish   995 ----CKTVLTSRVGGLMAFAQKR-------------STCIGCRAVLKTDVAVCDFCKKRESELYQ 1042

  Fly  2065 -----VVVLSDKTARLERGYQLTRQICQACCGRL-GSLQCDSLDCPVLYVLEGKRRELQQIE 2120
                 :..|.:|.:||     .|:  ||.|.|.| ..:.|.|.|||:.|:.:..:::|...|
Zfish  1043 KEIAHLSTLEEKFSRL-----WTQ--CQRCQGSLHEDVLCTSRDCPIFYMRKKVQKDLDDQE 1097

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PolZ1NP_524881.2 PTZ00166 20..>196 CDD:240301
DNA_polB_zeta_exo 1297..1518 CDD:99821 48/232 (21%)
POLBc_zeta 1550..2000 CDD:99917 148/477 (31%)
zf-C4pol 2041..2107 CDD:464119 21/75 (28%)
pold1NP_001034899.1 PTZ00166 59..1104 CDD:240301 260/972 (27%)
Blue background indicates that the domain is not in the aligned region.

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