DRSC/TRiP Functional Genomics Resources

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Protein Alignment DNApol-zeta and Nexmif

DIOPT Version :9

Sequence 1:NP_524881.2 Gene:DNApol-zeta / 47186 FlyBaseID:FBgn0002891 Length:2130 Species:Drosophila melanogaster
Sequence 2:NP_001300744.1 Gene:Nexmif / 302396 RGDID:1561931 Length:1517 Species:Rattus norvegicus


Alignment Length:846 Identity:178/846 - (21%)
Similarity:283/846 - (33%) Gaps:260/846 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   245 AKSKSNHTN-PGIE-AIWNDEKLRRQ-KLVEKHTDAGDEEKAEAVPVLELPPTQERHQIEIAESD 306
            ||.|:..|. .|.| .:.|..|.:.: :|..|....|.|.|    ||:::.|             
  Rat   701 AKVKAQDTEFKGPERKVLNKIKFKSEARLKSKKIKTGQENK----PVVQMSP------------- 748

  Fly   307 IFYRTALESKLMTLEQSTLSEQTLSDQTILPQATMQTTMPGT--KAQKRRFNLQKLLANAVY-PE 368
                              :||...|...:..:.|     |||  .:....|:..|::.|:.: |.
  Rat   749 ------------------VSEDPSSKANLKNEVT-----PGTSNSSHMSEFHETKVVKNSTFLPT 790

  Fly   369 ECSQDQQQLLVNASFIQNHVTCGYSSSVSLSTSKDESDDLDETVVDEELILSLTQPHGAIPHDAT 433
            .||.:......|.:.....:..||     |.|..|.||..:.|.:      |....|.|..::|:
  Rat   791 TCSSEMPLSSANVATNIPVIPGGY-----LQTLLDASDLSNNTSI------SYFTNHSAEQNEAS 844

  Fly   434 LREEDLELLDALQLLEEQNESESHVDLDSSLAPLSQHKKFE------LTPELLDKETAATAALFD 492
            |.:.:    .|...|:...:.......||.|...||:.|.|      |.|   ||:|:.:.....
  Rat   845 LSQTE----KAFAPLQSAQDCVLSSSSDSQLQQSSQNFKMEASNYGSLWP---DKDTSGSQEFMT 902

  Fly   493 EDVDSDEDADQETRHDFSTVLDDVDELLLKLTQSQ-------PAESKELKASSKLPQIDGADDRL 550
            |  .|.|.|..::....:|.:..::..|..:|.|.       ...:|.|.||.:...: ..||..
  Rat   903 E--VSGEIATSQSSEFEATQVVSMENNLTAITYSPVCLNSGGSGCNKVLYASVQDSHL-APDDSY 964

  Fly   551 QRTPIKS--ISSKSKSSPSKTPTTPIGQKSLPKSPRTPKTSAAKKYAPLALTIGSSSSKKS---- 609
            |.....:  |....:..|..|...  || .......||.:.::..|.||:|    .|.:|.    
  Rat   965 QLCHFNNGEICFPFQQGPISTEDD--GQ-LFSFDSMTPLSVSSSSYCPLSL----KSCEKDGDDD 1022

  Fly   610 -NDEFAGRPSNPRLSLQLDQGTGTGTLRPEISLRKKLAMSEMRRKSFEDSFVLLKNDCTPVRSTR 673
             ||:|....| |:|.:|                           :|.::           :...:
  Rat  1023 INDDFLAHCS-PKLVIQ---------------------------QSIDE-----------IAPLK 1048

  Fly   674 RSTSNLDKTHIICSLTP-RDRNPGLSDMFETEDGKQLPPKKV----------------------- 714
            .||..||    |.:.|| :.|:..||:| ...|...|.|:..                       
  Rat  1049 ESTDLLD----ISNFTPDKFRHSSLSEM-SPPDTPSLSPQSTRCESIKTLGTMKGFQEGVPGSLS 1108

  Fly   715 -VRKTRW--STRNQDIESLPKAGCEIERPHRSEGSALDELKPRRSARHKVNSANPDECSSEIQTT 776
             :.|.:|  ||.:|.:::             .:|..|:.   .:...|..|    ||.|..:...
  Rat  1109 SMEKIKWDCSTLSQQVQA-------------DDGFTLNN---HQFQFHMFN----DEDSVGLLQK 1153

  Fly   777 GPRVTTTSLDRP----QKKARLSQSPKENTKTSMNGTVALEKATKDSSSNSESPHQQENSV---- 833
            .|.::|  .|.|    ....::|:|.|   |||...:.|:.:::...::..:||......|    
  Rat  1154 NPCLST--FDEPAGQISANNKVSKSRK---KTSPGKSGAVSQSSSQKNTRKKSPKASNKGVEKPP 1213

  Fly   834 SEQIEYLESKPKKSDETARSCDEKLQRELIPQEPAGIS-PGDSANSTEE--ITFSPC--HDEAIE 893
            |:....:....||....|....||:|        .||. .|...|||..  .|.:.|  |...:.
  Rat  1214 SKTSRQVPKSAKKGKYVAAVNGEKMQ--------IGIGHSGGQPNSTSSNGKTLTECIQHGGPVA 1270

  Fly   894 SDTESDYIVTKLRKTPNLKRLR--WSIRSELLNKQFTPSSGIRPPETETTPQLSPKSNESNTPEL 956
            .           .|.|:.|.|.  |::..                  |:.|..:..|..:||..|
  Rat  1271 P-----------MKIPSQKGLSGDWALGK------------------ESRPGWNDMSVVTNTNNL 1306

  Fly   957 M----RSFYEHSLIVNSPSVFSDFLDSPEIHMDS--PRSAPP----------SPDSNSFVIAPLE 1005
            :    |.|.|.|.|::  ::.|...|.....|.|  |...|.          ||||||..:..|:
  Rat  1307 LDDDQREFQEPSYILS--NIASGMADVQRFMMASMEPLWEPMEHQGESNTFYSPDSNSLKLKTLK 1369

  Fly  1006 L 1006
            :
  Rat  1370 I 1370

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DNApol-zetaNP_524881.2 PTZ00166 20..>196 CDD:240301
DNA_polB_zeta_exo 1297..1518 CDD:99821
POLBc_zeta 1550..2000 CDD:99917
zf-C4pol 2041..2107 CDD:405022
NexmifNP_001300744.1 DUF4683 291..691 CDD:406222
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 381..416
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 505..529
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 644..697
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 732..775 14/82 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1065..1084 7/19 (37%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1161..1228 15/69 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1372..1422
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166349343
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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