DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Men and me1

DIOPT Version :9

Sequence 1:NP_524880.2 Gene:Men / 47173 FlyBaseID:FBgn0002719 Length:763 Species:Drosophila melanogaster
Sequence 2:XP_002938500.1 Gene:me1 / 100489590 XenbaseID:XB-GENE-1013221 Length:589 Species:Xenopus tropicalis


Alignment Length:550 Identity:314/550 - (57%)
Similarity:402/550 - (73%) Gaps:13/550 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly   218 GFTRLLDKRYSKGLAFTHEERQQLGIHGMLPYVVREP---SEQVEHCRAL--LARLDQDLDKYMY 277
            |:....|...:||:||:.|||.||||||:||     |   |:.|:..|.|  ..|...|||:|:.
 Frog    33 GYDITRDPHLNKGMAFSLEERLQLGIHGLLP-----PCFLSQDVQVLRVLRNYERQKCDLDRYIL 92

  Fly   278 LISLSERNERLFYNVLSSDIAYMMPLVYTPTVGLACQRYSLIHQNAKGMFISIKDKGHIYDVLKN 342
            |:.|.:|||:|||.||:|||...||:|||||||||||:|.|..:..:|:||:|.|:|||..|:|:
 Frog    93 LMGLQDRNEKLFYKVLTSDIERFMPVVYTPTVGLACQQYGLAFRRPRGLFITIHDRGHISTVMKS 157

  Fly   343 WPETDVRAIVVTDGERILGLGDLGANGMGIPVGKLSLYTALAGIKPSQCLPITLDVGTNTESILE 407
            |||.:::|:|||||||||||||||:.|||||||||:||||..|::|.:|||:.|||||:.:.:|.
 Frog   158 WPEDNIKAVVVTDGERILGLGDLGSYGMGIPVGKLALYTACGGVQPQECLPVMLDVGTDNQELLN 222

  Fly   408 DPLYIGLRERRATGDLYDEFIDEFMHACVRRFGQNCLIQFEDFANANAFRLLSKYRDSFCTFNDD 472
            ||||||||.||..|..|||.:||||.|...|:|.||||||||||||||||||:.||:.:||||||
 Frog   223 DPLYIGLRHRRVRGKEYDELVDEFMKAVTERYGINCLIQFEDFANANAFRLLNMYRNKYCTFNDD 287

  Fly   473 IQGTASVAVAGLLASLKIKKTQLKDNTLLFLGAGEAALGIANLCLMAMKVEGLTEEEAKARIWMV 537
            |||||:|||||||.:|:|.|.:|.|:|:||.||||||:|||:|.:|||:.||...:.|...||||
 Frog   288 IQGTAAVAVAGLLGALRITKNKLSDHTVLFQGAGEAAMGIADLIVMAMEKEGTPRDAAIKNIWMV 352

  Fly   538 DSRGVITRDRPKGGLTEHKLHFAQLHEPIDTLAEAVRKVRPNVLIGAAAQGGAFNQEILELMADI 602
            ||:|:|.:.|  ..|...|..||..|:.:.:|.|.|:.::|.||||.||.||||.::|::.||..
 Frog   353 DSKGLIVKGR--ASLNHEKERFAHPHKEMKSLEEVVKDIKPTVLIGVAAIGGAFTEQIIKDMASF 415

  Fly   603 NETPIIFALSNPTSKAECTAEEAYTYTKGRCIFASGSPFAPVTY-NNKKFYPGQGNNSYIFPGVA 666
            |..||||||||||||||||||:.|..|:||.||||||||.|||. :.:..|||||||:|:|||||
 Frog   416 NNRPIIFALSNPTSKAECTAEQCYRLTQGRGIFASGSPFDPVTLPDGRTLYPGQGNNAYVFPGVA 480

  Fly   667 LGVLCAGMLNIPEQVFLVAAERLAELVSKDDLAKGSLYPPLSSIVSCSMAIAERIVEYAYKNGLA 731
            |||:..|:.:|.:.|||..||.:|:.||...|.:|.|||||.:|...|:.||.:|||.|||:..|
 Frog   481 LGVVACGVRHISDDVFLTTAEIIAQQVSDKHLEEGRLYPPLQTIQEVSVKIAVKIVENAYKDNSA 545

  Fly   732 TVRPEPVNKLAFIKAQMYDLDYPRSVPATY 761
            :|.|||.||.||:::|||..||.:.:..:|
 Frog   546 SVFPEPENKEAFVRSQMYSTDYDQFMVDSY 575

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MenNP_524880.2 PLN03129 213..757 CDD:215594 313/544 (58%)
malic 282..463 CDD:278802 118/180 (66%)
NAD_bind_1_malic_enz 473..750 CDD:133454 155/277 (56%)
me1XP_002938500.1 PLN03129 31..571 CDD:215594 313/544 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 280 1.000 Domainoid score I1650
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H134785
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60768
OrthoDB 1 1.010 - - D334471at33208
OrthoFinder 1 1.000 - - FOG0000475
OrthoInspector 1 1.000 - - mtm9538
Panther 1 1.100 - - O PTHR23406
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X340
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1010.030

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