DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ebo and Xpo1

DIOPT Version :9

Sequence 1:NP_001284739.1 Gene:ebo / 47141 FlyBaseID:FBgn0266572 Length:1054 Species:Drosophila melanogaster
Sequence 2:NP_445942.1 Gene:Xpo1 / 85252 RGDID:620517 Length:1071 Species:Rattus norvegicus


Alignment Length:1189 Identity:224/1189 - (18%)
Similarity:415/1189 - (34%) Gaps:361/1189 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 ARKREIETNLLAFKSQPEAWQLCLRVATSSDTTENQFLWFFSTSTLEHTITRRWTQLTSTDKTLL 88
            |::|..:..|...|..|:||   .||.|..:.::|....::....||:.|..||..|.......:
  Rat    41 AQQRMAQEVLTHLKEHPDAW---TRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGI 102

  Fly    89 RETLWNSYAQLVATPNVAKRHRDTLAQLIALLG---KREFPEQDPNYMQHCMELTKTRFQLGIN- 149
            ::.:.....:..:.|...::.:..:.:|..:|.   |:|:|:..|.::...:..::|...|..| 
  Rat   103 KKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNN 167

  Fly   150 --LLKITSEEVVS-NRGDLTTEWKQYFYSCISMCVPDVLDLVTKYLLIAVCHINGKDIQTTIPNT 211
              :||:.||||.. :.|.:|                               .:..|.::.::.|.
  Rat   168 MVILKLLSEEVFDFSSGQIT-------------------------------QVKAKHLKDSMCNE 201

  Fly   212 LMD-FSLTSALPNDNQLSSSILDLLGCVQHLVSWI------RTELISE--YFLMSI--------- 258
            ... |.|...:..::|.:..:...|..:...::||      .|:|||.  |..:::         
  Rat   202 FSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLNVPMFRNVSLK 266

  Fly   259 -------LDLSQWRPAHEPISLAALSVLNELLYLQKPLPFPGPLMGGVTSLLEQHNNNRRQSEMY 316
                   :.:||:....|.:....:..|.::|.|.             |::...::|.:...:  
  Rat   267 CLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLN-------------TNIRLAYSNGKDDEQ-- 316

  Fly   317 SDKFRELLRLYTTKYAAKLMQEPDLLETFLNLLYSCTTELHGALDFTEK---------LEIW--- 369
              .|.:.|.|:...:   |.:...|||..|||..:....||..|..:|.         ||.|   
  Rat   317 --NFIQNLSLFLCTF---LKEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHL 376

  Fly   370 --------------TPIIKGIAQH---PAKITRYNNVLTQLVDEIMRRTQFEANKPELEVLDNEL 417
                          :|::.| :||   |.:...|..||:::...::.|..    ||| |||   :
  Rat   377 AAELYRESPFSTSASPLLSG-SQHFDIPPRRQLYLTVLSKVRLLMVSRMA----KPE-EVL---V 432

  Fly   418 MEDDTSATEWQQFLDQCFESLALLANTRGAHIVFAQVYNHWSRPQMYLLSLEHALDHGSARSYEA 482
            :|:|..... ::|:... :|:.|..|.|              ...:||..|:: :|.....:.:.
  Rat   433 VENDQGEVV-REFMKDT-DSINLYKNMR--------------ETLVYLTHLDY-VDTEIIMTKKL 480

  Fly   483 ARKLKGANVGEILRDFATVCQAVVRLAPLMDSSTAAPGVADEMECQLQMLSDSL--------LQT 539
            ..::.|....  .::..|:|.|:..::..|...       ||....:.::.|.|        ...
  Rat   481 QNQVNGTEWS--WKNLNTLCWAIGSISGAMHEE-------DEKRFLVTVIKDLLGLCEQKRGKDN 536

  Fly   540 LQLLASNRLYSGGSEMDKATFQTDLDNLYAQVLLAMRSIFPLTKAMSGEELLHRLFAILGSI--- 601
            ..::|||.:|..|.              |.:.|   |:.:...|.     ::::||..:...   
  Rat   537 KAIIASNIMYIVGQ--------------YPRFL---RAHWKFLKT-----VVNKLFEFMHETHDG 579

  Fly   602 ---FACNGSLTAASP----IVQQAASELLLF-------ISTVIRPKCLLDIPQIQSLLQA-GSRL 651
               .||:..:..|..    .||....|::.|       |:|:|   |.|...|:.:..:| |..:
  Rat   580 VQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTII---CDLQPQQVHTFYEAVGYMI 641

  Fly   652 GAQLPRQVCINVHISLVSYMVLP---WKSVPEQ---------QQEYPRRLWML------------ 692
            |||..:.|  ..|: :..||:||   |.|:.:|         ..|..::|..:            
  Rat   642 GAQTDQTV--QEHL-IEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVG 703

  Fly   693 REYVQGLAQNFLDL---------DLG---QANESKVAATTLSLLGTFTALIEYFKATGG-----N 740
            ..:|..|.:.:||:         ::.   |||...|....| :....|...|..|...|     |
  Rat   704 HPFVIQLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPL-IRSMRTVKRETLKLISGWVSRSN 767

  Fly   741 AKDMLASTFKPILTKALMIFNNFGQSSIAMAITVAEFSLSMLRTLPTHLGAQFIKEMITLFISVS 805
            ...|:|..|.|.|..|::|                    ...|.:|                  :
  Rat   768 DPQMVAENFVPPLLDAVLI--------------------DYQRNVP------------------A 794

  Fly   806 SREQLTLSRLAVMEKILQMFKLIVEQPGSASLGLLPSILDFSTQQILPLLQQQNAATDNSEITSL 870
            :||...||.:|:          ||.:.|......:|.|.|...:..|.::.:.            
  Rat   795 AREPEVLSTMAI----------IVNKLGGHITAEIPQIFDAVFECTLNMINKD------------ 837

  Fly   871 LYALFDSVLTCKWQFFYKNQLSNGHSGGGSGNFNCSDNLHPAHFMAILN----AYGQMLVSGTDP 931
                |:.....:..||...|..|.|.      |.....:.||.|..:|:    |:...:.:..|.
  Rat   838 ----FEEYPEHRTNFFLLLQAVNSHC------FPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADT 892

  Fly   932 SNVRSVLFS-MQNVNER---SRLYQRALFKEQLL------------------ASFQRALLNLLLS 974
            .  ..:||: :|||.:.   ::.:.:..|.:.|.                  ||....:.||:..
  Rat   893 G--LQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEE 955

  Fly   975 GEGSLHFDMIAQALYAMGQVDRRQLLESFV----HASLPVAQTSLEEICQTNVLPFIVQDIPTFT 1035
            |:       |:..|.....|..:..::.:|    .::.|..|.:..::..|.:.. :.||||.|.
  Rat   956 GK-------ISTPLNPGSPVSNQMFIQDYVANLLKSAFPHLQDAQVKLFVTGLFS-LNQDIPAFK 1012

  Fly  1036 QKLTQLMQDAHCVHLNETA 1054
            :.|...:     |.:.|.|
  Rat  1013 EHLRDFL-----VQIKEFA 1026

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eboNP_001284739.1 IBN_N 30..98 CDD:281761 15/67 (22%)
Xpo1 110..259 CDD:285575 30/180 (17%)
Xpo1NP_445942.1 CRM1 15..1044 CDD:227432 224/1189 (19%)
HEAT 1 217..240 4/22 (18%)
HEAT 2 241..277 5/35 (14%)
Necessary for interaction with Ran and nuclear export complex formation. /evidence=ECO:0000250 327..450 32/136 (24%)
HEAT 3 354..472 30/143 (21%)
Necessary for interaction with RANBP3. /evidence=ECO:0000250 411..481 20/94 (21%)
HEAT 4 515..553 8/51 (16%)
HEAT 5 560..597 6/41 (15%)
HEAT 6 602..639 9/39 (23%)
HEAT 7 775..813 14/85 (16%)
HEAT 8 885..916 6/32 (19%)
HEAT 9 917..954 6/36 (17%)
HEAT 10 1002..1039 9/31 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5101
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.