DRSC/TRiP Functional Genomics Resources

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Protein Alignment dup and cdt1

DIOPT Version :9

Sequence 1:NP_001286451.1 Gene:dup / 47121 FlyBaseID:FBgn0000996 Length:743 Species:Drosophila melanogaster
Sequence 2:XP_695164.3 Gene:cdt1 / 566787 ZFINID:ZDB-GENE-070111-1 Length:678 Species:Danio rerio


Alignment Length:787 Identity:220/787 - (27%)
Similarity:360/787 - (45%) Gaps:172/787 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAQPSVAAFFTNRKRAALDDAISIKNRR----LVEPAETVSPASAP-----------SQLPAGD- 49
            |||..|..:|...|:|.:..::..|.::    :||.|....|.|:.           |::...: 
Zfish     1 MAQARVTDYFAQSKKAGVSRSLRSKGQKVSGDVVESAVINKPRSSSRASGSSRKATHSEITTAEP 65

  Fly    50 -QDADLDTLKAAATGMRTRSGRT---ARLI----VTAAQESKKKT-----------PAAAKMEPH 95
             :...|:.||.....:.|.:..|   :|.:    :||:..:.|::           |:.|::...
Zfish    66 QKQTQLEFLKVIDEALSTETAETVADSRDVNIEGLTASPRTPKRSSPEFDVCSVLFPSTAELHSS 130

  Fly    96 IKQPKLVQFIKKGTLSPR----KQAQSSKLD----EEELQQSSAISEHTPKVNFTITSQQNADNV 152
            .|:.:.:........||.    ::....||:    :::::.:..::..:|:.......:::.:.|
Zfish   131 AKKRQRLNAGHNCRSSPEERTGQKTARKKLNLLASDDKVKSTEPLASSSPQAPQQTARKESKNTV 195

  Fly   153 QRGLRTPTKQILKDASPIKADLRRQLTFDEVKTKVSRSAKLQELKAVLALKAALEQKRKEQEERN 217
            .....|.|.              .:...||...:.:||.|....:.|.|||:.| ||.|.|.| |
Zfish   196 NHIANTSTV--------------NKPNGDENPQRATRSKKTFSREDVAALKSKL-QKLKGQSE-N 244

  Fly   218 RKLRDAGPSPSKSKMSVQLKEFDTIELEV-------LISPLKTFKTPTKIPPPTPDKHELMSPRH 275
            ......||..:.:::..:|.....|..:|       :|...|..:|.   |...|.:.|      
Zfish   245 VSTPSPGPVSTLTELKARLDAAREISAKVQQRKAERVIEEAKAAETQ---PATEPQERE------ 300

  Fly   276 TDVSKRLLFSPAKNGSPVKLVEVPAYKRYASLVESSRAGQLPLPYKYRHLLDVFKGLDSVVAMFH 340
                                 ::|||:||.:|.:....| |.|||:|:.|.::|:.|:::|||..
Zfish   301 ---------------------KLPAYQRYHTLAQDVPPG-LTLPYQYKLLAEMFRSLETIVAMLF 343

  Fly   341 NRKETITFKKLKPAVQRMLRKNFTETHLAQIKHIYPDAFIFSQVKT-RNFGSVSKADYFQLIIAP 404
            ||.||:||.|:|..||.|:||.|.|:||.|||.:||.|:.|.|.|. .:|.:.:|...:||.:.|
Zfish   344 NRSETVTFTKVKQGVQDMMRKRFEESHLGQIKAVYPSAYTFRQEKNIISFSATAKRSSYQLTVEP 408

  Fly   405 NVEPLPEQQQSEKPQHFTKINEDDVLASAQSTSMNPHVMTARMQRFQSLLLDRAMRAHDQFLRSQ 469
            .::   |:.:..:|          ||::::        :..|...|...|::.....|..||.|.
Zfish   409 VID---EEFKGVRP----------VLSASR--------LLERRHIFHQNLVEIVKGHHKTFLASL 452

  Fly   470 DPPIII-EKALTRWHPQFDLESCPEVELSPLPQPPNVEKYSSAKDILSTARNLFNCATP-MERAM 532
            :|||:: ::.||||||:|.::..|.|:.|.|||||..||.:||:::|..||.|.   || ||:|:
Zfish   453 NPPIVVPDEKLTRWHPRFSVDEVPNVKPSDLPQPPQTEKLTSAQEVLDKARALM---TPKMEKAL 514

  Fly   533 DRYEAKLESEKQQAAESNKKTEEQQAGEVTRTSTAIQTSQEVPGISGSSKNPTVPETTNQTETAK 597
            .....| .:||....|                                      |||        
Zfish   515 ANMALK-TAEKACVKE--------------------------------------PET-------- 532

  Fly   598 PTVKDCTVPDASSNLLKGLPKSLIEKIRAKQAAKALEAMTRRPSQDQEATKYSRLPELARHLRNV 662
             |.|....|..:...|||:.:||:|:||||:|.|....|||.|.|::.....||||||||.||||
Zfish   533 -TAKSAVTPTETPGALKGVSQSLLERIRAKEAQKLHAVMTRNPQQEERLLMMSRLPELARILRNV 596

  Fly   663 FVTERKGVLTLEVIIKKIQNSFRANLTPQEIEAHLKLLAKELPSWASFHEVRKTMYLKVAKDMDM 727
            ||.|:|..|.:|:...::..|:|:.||..|:|.||:|||:..|:|.:.|.:||.:|||:.|..|:
Zfish   597 FVAEKKPALIMELACNRMIASYRSPLTSDEMEKHLRLLAELTPAWLTIHPIRKDLYLKLNKTTDL 661

  Fly   728 NKIIEKL 734
            :.:::||
Zfish   662 SIVLDKL 668

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dupNP_001286451.1 CDT1 318..500 CDD:285985 65/183 (36%)
Cdt1_c 610..735 CDD:176572 58/125 (46%)
cdt1XP_695164.3 CDT1 321..484 CDD:285985 65/183 (36%)
Cdt1_c 544..669 CDD:176572 58/125 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170592692
Domainoid 1 1.000 118 1.000 Domainoid score I5853
eggNOG 1 0.900 - - E1_KOG4762
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 258 1.000 Inparanoid score I3129
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D218447at33208
OrthoFinder 1 1.000 - - FOG0007528
OrthoInspector 1 1.000 - - oto38844
orthoMCL 1 0.900 - - OOG6_105773
Panther 1 1.100 - - LDO PTHR28637
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4071
SonicParanoid 1 1.000 - - X6418
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1413.790

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