DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment comt and SEC18

DIOPT Version :9

Sequence 1:NP_001259506.1 Gene:comt / 47091 FlyBaseID:FBgn0000346 Length:745 Species:Drosophila melanogaster
Sequence 2:NP_009636.3 Gene:SEC18 / 852372 SGDID:S000000284 Length:758 Species:Saccharomyces cerevisiae


Alignment Length:729 Identity:324/729 - (44%)
Similarity:476/729 - (65%) Gaps:25/729 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LKATKCPTDELSLTNRAIVNVGDFPEEIKYADISPAPGQHFIFALEKTVEVPSGYVGFSLVQRKW 69
            ||.:.||.:..:|.|.|.|:..|||..| |..|.    ..|:|....:.::|.|.:||:..||.|
Yeast    29 LKVSNCPNNSYALANVAAVSPNDFPNNI-YIIID----NLFVFTTRHSNDIPPGTIGFNGNQRTW 88

  Fly    70 AMVSINQELEVRP---YRFDASSDVITCVSFETDFLQKKTVSQEPYDSDQMAKEFIMQFAGMALT 131
            ...|:||:::.:.   :::......:..:..:..|..:.......:|.|::||:|:..:.....:
Yeast    89 GGWSLNQDVQAKAFDLFKYSGKQSYLGSIDIDISFRARGKAVSTVFDQDELAKQFVRCYESQIFS 153

  Fly   132 VGQSLVFNFKDKKLLGLAVKSLEAID-----PKS-LGEGKDTAMRNVRFGRILGNTVVQFEKAEN 190
            ..|.|:..|:. ....|.:::::|||     |.| :..|.:|.      |.:...|.:.|.|..:
Yeast   154 PTQYLIMEFQG-HFFDLKIRNVQAIDLGDIEPTSAVATGIETK------GILTKQTQINFFKGRD 211

  Fly   191 SSLNLQGKSKGKVVRQSIINPDWDFGKMGIGGLDKEFNSIFRRAFASRVFPPELVEQLGCKHVKG 255
            ..:||:..:..:....::|.||:.|..:|:|||||||..|||||||||:|||.::|:||..||||
Yeast   212 GLVNLKSSNSLRPRSNAVIRPDFKFEDLGVGGLDKEFTKIFRRAFASRIFPPSVIEKLGISHVKG 276

  Fly   256 ILLYGPPGTGKTLMARQIGTMLNAREPKIVNGPQILDKYVGESEANVRRLFAEAEEEEKRLGPNS 320
            :||||||||||||:||:|||||||:||||||||:||.||||.||.|:|.||.:||.|.:..|..|
Yeast   277 LLLYGPPGTGKTLIARKIGTMLNAKEPKIVNGPEILSKYVGSSEENIRNLFKDAEAEYRAKGEES 341

  Fly   321 GLHIIIFDEIDAICKQRGSVAGNSGVHDTVVNQLLTKIDGVDQLNNILVIGMTNRRDMIDEALLR 385
            .||||||||:|::.|||||....:||.|.||||||.|:|||||||||||||||||:|:||.||||
Yeast   342 SLHIIIFDELDSVFKQRGSRGDGTGVGDNVVNQLLAKMDGVDQLNNILVIGMTNRKDLIDSALLR 406

  Fly   386 PGRLEVQMEISLPNEQGRVQILNIHTKRMREFNKINDDVDNKEIAALTKNFSGAELEGLVRAAQS 450
            |||.|||:||.||:|:||:||.:|.||:|||.|.::|||:..|:|||||||||||:||||::|.|
Yeast   407 PGRFEVQVEIHLPDEKGRLQIFDIQTKKMRENNMMSDDVNLAELAALTKNFSGAEIEGLVKSASS 471

  Fly   451 SAMNRLIKADAKVT-VDPEAMEKLKVNRDDFLHSLEHDIKPAFGTAQEILDNMLARGVINWGAPV 514
            .|:|:.:......| ::.:.:.||||.|:|||::| :|:.||||.::|.|...:..|::.:...|
Yeast   472 FAINKTVNIGKGATKLNTKDIAKLKVTREDFLNAL-NDVTPAFGISEEDLKTCVEGGMMLYSERV 535

  Fly   515 SNLLEDGMLYVQQAKAPESSGLVSVLVAGAPNSGKTALAAQLAKMSDFPFVKVCSPEDMVGYTES 579
            :::|::|..||:|.:..:.|.|||:|:.|...||||||||::|..|.|||:::.||.::.|.:||
Yeast   536 NSILKNGARYVRQVRESDKSRLVSLLIHGPAGSGKTALAAEIALKSGFPFIRLISPNELSGMSES 600

  Fly   580 AKCLHIRKIFDDAYRSMLSCIVVDNVERLLDYGSIGPRYSNMTLQALLVLLKKQPPKGRKLLILC 644
            ||..:|...|.|||:|.|:.:|:|::|.|:|:..||||:||..||.|.|.||::||:.|:|||:.
Yeast   601 AKIAYIDNTFRDAYKSPLNILVIDSLETLVDWVPIGPRFSNNILQMLKVALKRKPPQDRRLLIMT 665

  Fly   645 TSSRREVLEEMEMLTAFTSVLHVPNLSKPDHVLAV-LENTDIFSKGEIQAIGKKMAGKRVF-IGI 707
            |:|...||::|::|:.|.:.:.|||::..|.:..| :|:..:...|.::.|.:.......| :||
Yeast   666 TTSAYSVLQQMDILSCFDNEIAVPNMTNLDELNNVMIESNFLDDAGRVKVINELSRSCPNFNVGI 730

  Fly   708 KKLLGLIDMARQTE 721
            ||.|..|:.||..|
Yeast   731 KKTLTNIETARHDE 744

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
comtNP_001259506.1 CDC48_N 5..83 CDD:215012 26/80 (33%)
CDC48_2 111..>158 CDD:215011 12/51 (24%)
SpoVK 242..699 CDD:223540 242/458 (53%)
AAA 256..397 CDD:278434 102/140 (73%)
AAA 539..668 CDD:278434 59/128 (46%)
SEC18NP_009636.3 CDC48_N 29..98 CDD:215012 26/73 (36%)
CDC48_2 134..204 CDD:215011 18/76 (24%)
RecA-like_NSF-SEC18_r1-like 240..416 CDD:410912 127/175 (73%)
SpoVK 263..758 CDD:223540 252/483 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157343994
Domainoid 1 1.000 208 1.000 Domainoid score I519
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H4502
Inparanoid 1 1.050 595 1.000 Inparanoid score I135
Isobase 1 0.950 - 0 Normalized mean entropy S525
OMA 1 1.010 - - QHG52406
OrthoFinder 1 1.000 - - FOG0003053
OrthoInspector 1 1.000 - - otm46683
orthoMCL 1 0.900 - - OOG6_101440
Panther 1 1.100 - - LDO PTHR23078
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1308
SonicParanoid 1 1.000 - - X2410
TreeFam 1 0.960 - -
1615.740

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