DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment comt and Nvl

DIOPT Version :9

Sequence 1:NP_001259506.1 Gene:comt / 47091 FlyBaseID:FBgn0000346 Length:745 Species:Drosophila melanogaster
Sequence 2:NP_001099450.1 Gene:Nvl / 289323 RGDID:1311270 Length:855 Species:Rattus norvegicus


Alignment Length:782 Identity:196/782 - (25%)
Similarity:309/782 - (39%) Gaps:237/782 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 NVGDFPEEIKYADISPAPGQHFIFALEKTVEVPSGYVGFSLVQR-KWAMVSINQELEVRPYRFDA 87
            |:.|:|:        |....|...:|            .||.:: ....||...:||.|.   ||
  Rat   105 NMEDYPD--------PQSANHMNSSL------------LSLYRKGNSDSVSTTPKLEQRE---DA 146

  Fly    88 SSDVITCVSFETDFLQKKTVSQEPYDSDQMAKEFIMQFAG-------MALTVGQSL-------VF 138
            :|..:  :|.:||.:..||.::||...     .||.:..|       :.|:..||.       :.
  Rat   147 TSSPL--LSSKTDSMPLKTPAREPEGG-----WFIDKTPGGQKESLPLDLSDDQSNCKKQDPGIQ 204

  Fly   139 NFKDKKLLGLAVKSLEAIDPKSLGEGKDTAMRNVRFGRILGNTVVQFEKAENSSLN--------- 194
            |.||..||....|.      ||..:||             ||      |.:...|.         
  Rat   205 NLKDSSLLESDKKR------KSRAKGK-------------GN------KRKTEGLQEADGEIEAI 244

  Fly   195 LQGKSKGKVVRQSIINPDWDFGKMGIGGLDKEFNSIFRRAFASRVFPPELVEQLGCKHVKGILLY 259
            ||.::|.|.....|.:..::    .:||.|.....:.:.....|  .||:.:.||....:|:||:
  Rat   245 LQKRAKAKSTELQISSVKFE----DVGGNDATLKEVCKMLIHMR--HPEVYQHLGVVPPRGVLLH 303

  Fly   260 GPPGTGKTLMARQIGTMLNAREPKIVNGPQILDKYVGESEANVRRLFAEAEEEEKRLGPNSGLHI 324
            ||||.||||:|..|...|:....|:. .|:|:....||||..:|.||.:|        .::...|
  Rat   304 GPPGCGKTLLAHAIAGELDLPILKVA-APEIVSGVSGESEQKLRDLFDQA--------VSNAPCI 359

  Fly   325 IIFDEIDAICKQRGSVAGNSGVHDTVVNQLLTKIDGVDQLNN------ILVIGMTNRRDMIDEAL 383
            :..||||||..:| .|| :..:...:|.||||   .:|.|||      :||:|.|||.|.:|.||
  Rat   360 VFIDEIDAITPKR-EVA-SKDMERRIVAQLLT---CMDDLNNVAATARVLVVGATNRPDSLDPAL 419

  Fly   384 LRPGRLEVQMEISLPNEQGRVQILNIHTKRMREFNKINDDVDNKEIAALTKNFSGAELEGLVRAA 448
            .|.||.:.::.:.:|:|..|.:||....:::|    :.:..:...:|.||..|.||:|..|.|.|
  Rat   420 RRAGRFDREVCLGIPDEASRERILQTLCRKLR----LPETFNFSHLAHLTPGFVGADLMALCREA 480

  Fly   449 QSSAMNR-LIKADAKVTVDPEA------------------------------------------M 470
            ...|::| |::...:...:||.                                          |
  Rat   481 AVCAVHRVLMRRQEQQRTEPETGGLPSDGEQGRSLGAEPPSETQDELQRLLGLLRDQDPISEEQM 545

  Fly   471 EKLKVNRDDFLHSLEHDIKPA----------------FGTAQEILDNMLARGVINWGAPVSNLLE 519
            :.|.:..:||:.:|. :::|:                .|..::|.:. |...::   |||.|   
  Rat   546 QGLCLELNDFIVALS-EVQPSAKREGFVTVPNVTWADVGALEDIREE-LTMAIL---APVRN--- 602

  Fly   520 DGMLYVQQAKAPE---SSGLVS---VLVAGAPNSGKTALAAQLAKMSDFPFVKVCSPEDM---VG 575
                       ||   :.|||:   ||:||.|..|||.||..:|..|...|:.|..||.:   ||
  Rat   603 -----------PEQFRALGLVAPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVG 656

  Fly   576 YTESAKCLHIRKIFDDAYRSMLSCIVVDNVERLLDYGSIGPRYSNMTLQALLVLLKKQPPKGRKL 640
            .:|.|    :|::|..|..|....|..|.|:.|.      ||.|:....|.:.::          
  Rat   657 ESERA----VRQVFQRAKNSAPCVIFFDEVDALC------PRRSDRETGASVRVV---------- 701

  Fly   641 LILCTSSRREVLEEMEMLTAFTSVLHVPNLSKPDHVLAVLENTDIFSKGEIQAIGKKMAGKRVFI 705
                    .::|.||:.|.....|..:...::||.:     :..|...|.:.        |.:|:
  Rat   702 --------NQLLTEMDGLETRQQVFILAATNRPDII-----DPAILRPGRLD--------KTLFV 745

  Fly   706 GI 707
            |:
  Rat   746 GL 747

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
comtNP_001259506.1 CDC48_N 5..83 CDD:215012 13/59 (22%)
CDC48_2 111..>158 CDD:215011 13/60 (22%)
SpoVK 242..699 CDD:223540 141/530 (27%)
AAA 256..397 CDD:278434 56/146 (38%)
AAA 539..668 CDD:278434 37/131 (28%)
NvlNP_001099450.1 Nucleolin_bd 2..71 CDD:406995
CDC48 <255..855 CDD:273521 149/577 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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