DRSC/TRiP Functional Genomics Resources

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Protein Alignment comt and cdc-48.1

DIOPT Version :9

Sequence 1:NP_001259506.1 Gene:comt / 47091 FlyBaseID:FBgn0000346 Length:745 Species:Drosophila melanogaster
Sequence 2:NP_496273.1 Gene:cdc-48.1 / 174624 WormBaseID:WBGene00007352 Length:809 Species:Caenorhabditis elegans


Alignment Length:783 Identity:193/783 - (24%)
Similarity:322/783 - (41%) Gaps:190/783 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAYILKATKCPTDELSLTNRAI-----VNVGDFPEEIKYADISPAPGQHF-----IFALEKTVEV 55
            :|.|:....||.:::.: ||.:     :.:||      ...|:|||...:     :..::.|:|.
 Worm    74 VAIIVSDESCPNEKVRM-NRVVRNNLRIRLGD------VVSITPAPNLSYGTRIHVLPIDDTIEG 131

  Fly    56 PSGYVGFSLVQRKWAMVSINQELEVRPYRFDA-----SSDVITCVSFETDFLQKKTVSQEPYDSD 115
            .:|.:               .::.::||..:|     ..|:.| |......::.|.|..||..:.
 Worm   132 LTGNL---------------FDVFLKPYFLEAYRPLHKGDIFT-VQAAMRTVEFKVVETEPAPAC 180

  Fly   116 QMAKEFIMQFAGMALTVGQSLVFNFKDKKLLGLAVKSLEAIDPKSLGEGKDTAMRNVRFGRILGN 180
            .::.:.::.:.|                             ||....|                 
 Worm   181 IVSPDTMIHYEG-----------------------------DPIKREE----------------- 199

  Fly   181 TVVQFEKAENSSLNLQGKSKGKVVRQSIINPDWDFGKMGIGGLDKEFNSIFRRAFASRVFPPELV 245
                    |..|:|                   |.|...:||:.|:...| :......:..|:|.
 Worm   200 --------EEESMN-------------------DIGYDDLGGVRKQLAQI-KEMVELPLRHPQLF 236

  Fly   246 EQLGCKHVKGILLYGPPGTGKTLMARQIGTMLNAREPK----IVNGPQILDKYVGESEANVRRLF 306
            :.:|.|..:||||:|||||||||:||.:     |.|..    ::|||:::.|..||||:|:|:.|
 Worm   237 KAIGIKPPRGILLFGPPGTGKTLIARAV-----ANETGSFFFLINGPEVMSKMSGESESNLRKAF 296

  Fly   307 AEAEEEEKRLGPNSGLHIIIFDEIDAICKQRGSVAGNSGVHDTVVNQLLTKIDGVDQLNNILVIG 371
            .|.|:.:..        |:..||||||..:|...  |..|...:|:||||.:|||...:|::||.
 Worm   297 EECEKNQPA--------ILFIDEIDAIAPKREKT--NGEVERRIVSQLLTLMDGVKGRSNLVVIA 351

  Fly   372 MTNRRDMIDEALLRPGRLEVQMEISLPNEQGRVQILNIHTKRMREFNKINDDVDNKEIAALTKNF 436
            .|||.:.||.||.|.||.:.:::|.:|:..||::||.||||.|    |:.||||.::||.....|
 Worm   352 ATNRPNSIDGALRRFGRFDREIDIGIPDAVGRLEILRIHTKNM----KLADDVDLEQIANECHGF 412

  Fly   437 SGAELEGLV-RAAQSSAMNRLIKADAK-VTVDPEAMEKLKVNRDDFLHSLEHDIKPAFGTAQEIL 499
            .||:|..|. .||......::...|.: ..:|.|.:..|.|..::|..:.......|...|....
 Worm   413 VGADLASLCSEAALQQIREKMELIDLEDDQIDAEVLNSLAVTMENFRFAQGKSSPSALREAVVET 477

  Fly   500 DNML---ARGVINWGAPVSNL----LEDGMLYVQQAKAPESSGLVSVLVAGAPNSGKTALAAQLA 557
            .|..   ..|:.|....:..|    :|....|::....| |.|   ||..|.|..|||.||..:|
 Worm   478 PNTTWSDIGGLQNVKRELQELVQYPVEHPEKYLKFGMQP-SRG---VLFYGPPGCGKTLLAKAIA 538

  Fly   558 KMSDFPFVKVCSPEDMV---GYTESAKCLHIRKIFDDAYRSMLSCIV----VDNVERLL------ 609
            ......|:.:..||.:.   |.:|:    ::|.:||.| |:...|::    :|::.:..      
 Worm   539 NECQANFISIKGPELLTMWFGESEA----NVRDVFDKA-RAAAPCVLFFDELDSIAKARGGGAGG 598

  Fly   610 DYGSIGPRYSNMTLQALLVLLKKQPPKGRKLLILCTSSRREVLEEMEMLTA-FTSVLHVP---NL 670
            |.|....|..|..|..:..:..|     :.:.|:..::|.::::...:... ...::::|   ..
 Worm   599 DGGGASDRVINQVLTEMDGMNAK-----KNVFIIGATNRPDIIDPAVLRPGRLDQLIYIPLPDEA 658

  Fly   671 SKPDHVLAVLENTDIFSKGEIQAIGKKMAGKRVFIGIKKLLGLIDMARQTEQSQRAIKFL--SKM 733
            |:...:.|.|..|.:....::..:.|...|   |.|          |..||..|||.|..  ..:
 Worm   659 SRHQILKASLRKTPLSKDLDLTFLAKNTVG---FSG----------ADLTEICQRACKLAIRESI 710

  Fly   734 EEE 736
            |:|
 Worm   711 EKE 713

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
comtNP_001259506.1 CDC48_N 5..83 CDD:215012 13/87 (15%)
CDC48_2 111..>158 CDD:215011 2/46 (4%)
SpoVK 242..699 CDD:223540 143/486 (29%)
AAA 256..397 CDD:278434 61/144 (42%)
AAA 539..668 CDD:278434 30/142 (21%)
cdc-48.1NP_496273.1 CDC48_N 31..112 CDD:280513 10/44 (23%)
CDC48 52..775 CDD:273521 193/783 (25%)
CDC48_2 137..197 CDD:215011 13/89 (15%)
AAA 247..376 CDD:278434 60/143 (42%)
AAA 520..654 CDD:278434 30/143 (21%)
Vps4_C <727..771 CDD:286426
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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