DRSC/TRiP Functional Genomics Resources

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Protein Alignment acj6 and pou4f1

DIOPT Version :9

Sequence 1:NP_524876.1 Gene:acj6 / 47080 FlyBaseID:FBgn0000028 Length:396 Species:Drosophila melanogaster
Sequence 2:NP_001299795.1 Gene:pou4f1 / 58057 ZFINID:ZDB-GENE-000523-2 Length:366 Species:Danio rerio


Alignment Length:411 Identity:199/411 - (48%)
Similarity:233/411 - (56%) Gaps:87/411 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 MSMYSTTDKMKMSAPSCFPGRYSPSYRSSEQMRR-CMPNPSIHISSSCDSLESRLLEDASLLCNS 66
            |||.|......|. ||....:|:..:.|||.:|| |:..|.:                       
Zfish     2 MSMNSKQPHFAMH-PSLPEHKYTTLHSSSEAIRRACLQTPQL----------------------- 42

  Fly    67 WSARQNGDIFAGINDGILSRAEALAAVDIQKHQAQHVHSQMPSQIKHDVMYHHHSMSGPPQRPLQ 131
                 ..:|||.:::.:|:||||||||||...|.:      ....|.|..|  |:|:..|.....
Zfish    43 -----QSNIFASLDETLLARAEALAAVDIAVSQGK------SHPFKPDATY--HTMNTVPCSSTS 94

  Fly   132 ENPFSRQMHH-------SMDQLDMLDP-TGSMTTLAPISE----------------SPLTPTHQH 172
            ..|.:...||       :::..|:::. |.....|.|.:.                |.....|.|
Zfish    95 TVPLAHHHHHHHHHHHQNLEPADLMEHITSPSLALMPSAHEGAGGGGGGGGGGGLISTSAHPHSH 159

  Fly   173 LHGSYH------SMNHMMSHHHPGTLSGHTGG-HHGHSAVHH---PVITAAVAAAGLHPDTDTDP 227
            :||..|      :||..:|||  |.|.||.|| |.|...:.:   |.|.          |:||||
Zfish   160 MHGLTHLSHQAMNMNSPLSHH--GLLPGHHGGAHQGAPGLVNNGLPSIN----------DSDTDP 212

  Fly   228 RELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALKPILQ 292
            |||||||||||||||||||||||||.||||||:||||:|||||||||||||||||||||||||||
Zfish   213 RELEAFAERFKQRRIKLGVTQADVGGALANLKIPGVGSLSQSTICRFESLTLSHNNMIALKPILQ 277

  Fly   293 AWLEEAEAQAKNKRRDPDAPSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKL 357
            |||||||...:.|...||   :....||||||||||||||||||||||||||||.||||||||||
Zfish   278 AWLEEAEGAQREKMSKPD---IFNGSEKKRKRTSIAAPEKRSLEAYFAVQPRPSSEKIAAIAEKL 339

  Fly   358 DLKKNVVRVWFCNQRQKQKRI 378
            ||||||||||||||||||||:
Zfish   340 DLKKNVVRVWFCNQRQKQKRL 360

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
acj6NP_524876.1 POU 222..299 CDD:197673 72/76 (95%)
Homeobox 323..377 CDD:395001 52/53 (98%)
pou4f1NP_001299795.1 POU 207..284 CDD:197673 72/76 (95%)
Homeobox 305..358 CDD:278475 51/52 (98%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170592230
Domainoid 1 1.000 141 1.000 Domainoid score I4657
eggNOG 1 0.900 - - E1_KOG3802
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 308 1.000 Inparanoid score I2604
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D396215at33208
OrthoFinder 1 1.000 - - FOG0001337
OrthoInspector 1 1.000 - - otm25862
orthoMCL 1 0.900 - - OOG6_105854
Panther 1 1.100 - - LDO PTHR11636
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2889
SonicParanoid 1 1.000 - - X830
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1413.790

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