DRSC/TRiP Functional Genomics Resources

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Protein Alignment acj6 and pou2f1

DIOPT Version :10

Sequence 1:NP_524876.1 Gene:acj6 / 47080 FlyBaseID:FBgn0000028 Length:396 Species:Drosophila melanogaster
Sequence 2:XP_012812406.1 Gene:pou2f1 / 549091 XenbaseID:XB-GENE-853992 Length:764 Species:Xenopus tropicalis


Alignment Length:364 Identity:114/364 - (31%)
Similarity:162/364 - (44%) Gaps:91/364 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    83 ILSRAEA-LAAVDIQKHQAQHVHSQMPSQIKHDVMYHHHSMSGPPQRPLQENPFS---------- 136
            :|.:|:| |.|..:| |.|...||...:.|           |.....|:.:.|.|          
 Frog   144 LLQQAQAQLLAAAVQ-HSASQQHSAAGATI-----------SASAATPMTQIPLSQPIQIAQDLQ 196

  Fly   137 -----RQMHHSMDQLDMLDPTGSMTTLAP----ISESP------------LTPTHQHLHGSYHSM 180
                 :|.:.::.|..::.||   |.|.|    ||::|            ||...|      .|.
 Frog   197 QLQQLQQQNLNLQQFVLVHPT---TNLPPAQFIISQTPQGQQGLLQAQNLLTQLPQ------QSQ 252

  Fly   181 NHMMSHHHPGTLSGHTGGHHGHSAVHHPVITAAVAAAGLHPDTDTDPR--------------ELE 231
            .:::......||:         |....|..|.|.......|.:.|.|:              |||
 Frog   253 ANLLQSQPSITLT---------SQPATPTRTIAATPVQQLPQSQTTPKRIDTPSLEEPSDLEELE 308

  Fly   232 AFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALKPILQAWLE 296
            .||:.|||||||||.||.|||.|:.  ||.| ...||:||.|||:|.||..||..|||:|:.||.
 Frog   309 QFAKTFKQRRIKLGFTQGDVGLAMG--KLYG-NDFSQTTISRFEALNLSFKNMCKLKPLLEKWLN 370

  Fly   297 EAEAQAKNKRRDPDAPSVLPA--------GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAI 353
            :|..:...........|||.:        ..:::|||||....:.:||..|....:|:.|:|..|
 Frog   371 DAVLENITSDSSLSNQSVLNSPGHGMEGLNRRRKKRTSIETNIRVALEKSFLENQKPTSEEITMI 435

  Fly   354 AEKLDLKKNVVRVWFCNQRQKQKRIVSSVTPSMTGHGSA 392
            |::|:::|.|:||||||:|||:|||    .|..:|..|:
 Frog   436 ADQLNMEKEVIRVWFCNRRQKEKRI----NPPSSGGSSS 470

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
acj6NP_524876.1 POU 222..299 CDD:197673 43/90 (48%)
Homeodomain 321..377 CDD:459649 25/55 (45%)
pou2f1XP_012812406.1 POU 299..372 CDD:197673 41/75 (55%)
Homeodomain 403..459 CDD:459649 25/55 (45%)
POU2F1_C 473..750 CDD:437368
Blue background indicates that the domain is not in the aligned region.

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