DRSC/TRiP Functional Genomics Resources

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Protein Alignment acj6 and Ccdc160

DIOPT Version :9

Sequence 1:NP_524876.1 Gene:acj6 / 47080 FlyBaseID:FBgn0000028 Length:396 Species:Drosophila melanogaster
Sequence 2:NP_001029231.1 Gene:Ccdc160 / 434778 MGIID:3588225 Length:323 Species:Mus musculus


Alignment Length:105 Identity:23/105 - (21%)
Similarity:34/105 - (32%) Gaps:45/105 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly   238 KQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTL-------SHNNMIALKPILQAWL 295
            ::||:.:....|:...|.                  ::||.|       ||....|     .|| 
Mouse    80 RERRMNVSKNDANTNSAF------------------WDSLHLDDATKESSHRRESA-----SAW- 120

  Fly   296 EEAEAQAKNKRRDPDAPSVLPAGEKKRKRTSIAAPEKRSL 335
                    ||::.|.|..|      .||:.:.|.|.|..|
Mouse   121 --------NKKKLPAATQV------TRKKWTEAMPPKLRL 146

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
acj6NP_524876.1 POU 222..299 CDD:197673 12/67 (18%)
Homeobox 323..377 CDD:395001 5/13 (38%)