DRSC/TRiP Functional Genomics Resources

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Protein Alignment acj6 and Cchcr1

DIOPT Version :9

Sequence 1:NP_524876.1 Gene:acj6 / 47080 FlyBaseID:FBgn0000028 Length:396 Species:Drosophila melanogaster
Sequence 2:NP_001002822.2 Gene:Cchcr1 / 406196 RGDID:1302992 Length:869 Species:Rattus norvegicus


Alignment Length:416 Identity:80/416 - (19%)
Similarity:135/416 - (32%) Gaps:129/416 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 KMSAPSCFPGRYSPSYRSSEQMRRCMPN---------PSIHISSSCDSLESRLLEDASLLCNSWS 68
            :|..||.|.|...||:..:..: ..:|.         |.:......|.||.||....|.: ..| 
  Rat    83 EMLPPSGFDGLVPPSHFQARPL-STLPRMASTWASNVPLVQSPPGQDVLERRLDTQRSTV-TMW- 144

  Fly    69 ARQNGDIFAGINDGILSRAEA--LAAVDIQKHQAQHVHSQMPS--QIKHDVMYHHHSMSGPPQRP 129
                |..|.|...|:..|..:  |........||:.:..|:..  .::.:|            |.
  Rat   145 ----GQDFCGDRQGLGRRGRSLELGVSGALSQQAELISRQLQELRLLEEEV------------RT 193

  Fly   130 LQENPFSRQMHHSMD--QLDML---------DPTGSMTTLAPISESPLTPTHQHLHGSYHSMNHM 183
            |:|....::|.....  :||.|         :..|..|.||...     ...::|..:.......
  Rat   194 LRETSLQQKMRLESQAVELDALAVAEKAGQAEAEGLRTALAGAE-----MVRKNLEEAKQKELEE 253

  Fly   184 MSHHHPGTLSGHTGGHHGHSAVHHPVITAAVAAAGLHPDTDTDPRELEAFAERFKQRRIKLGVTQ 248
            :...|...||..|..|.                           :.|::...:.:          
  Rat   254 IQSLHQEQLSSLTQAHQ---------------------------KALDSLTSKAE---------- 281

  Fly   249 ADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALKPILQAWLEEAEAQ---AKNKRR--- 307
             |:.|:|.:|::...|...|        ||::......|:..|....||.|||   .:|.|:   
  Rat   282 -DLEKSLNSLEMKQAGEAKQ--------LTMAQKEAELLRNQLSKTQEELEAQVTLVENLRKYVG 337

  Fly   308 ---DPDAPSVLPAGEK----------KRKRTSIAAPEK------RSLEAYFAVQPRPSGEKIAAI 353
               .|:.||.....|:          |..||::.|..:      :||....|:|......||..:
  Rat   338 EQVPPEVPSQARELEQKELLDTLKHLKEDRTNLQATVELLQVRVQSLTHMLALQEEELTRKIHPL 402

  Fly   354 AEKLDLK-----KNVVRVWFCNQRQK 374
             :.|:.:     ::::|.|    |:|
  Rat   403 -DPLEPEFPKKCRSLLRGW----REK 423

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
acj6NP_524876.1 POU 222..299 CDD:197673 13/76 (17%)
Homeobox 323..377 CDD:395001 14/63 (22%)
Cchcr1NP_001002822.2 HCR 110..853 CDD:284517 72/388 (19%)
DUF342 <305..384 CDD:302792 17/78 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3802
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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