DRSC/TRiP Functional Genomics Resources

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Protein Alignment acj6 and pou1f1

DIOPT Version :9

Sequence 1:NP_524876.1 Gene:acj6 / 47080 FlyBaseID:FBgn0000028 Length:396 Species:Drosophila melanogaster
Sequence 2:NP_998016.1 Gene:pou1f1 / 405777 ZFINID:ZDB-GENE-040630-7 Length:350 Species:Danio rerio


Alignment Length:364 Identity:111/364 - (30%)
Similarity:168/364 - (46%) Gaps:73/364 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 CNSWSARQNGDIFAGINDGILSRAEALAAVDIQKHQA-------QHVHSQMPS---QIKHDVMYH 118
            |.::|   ..|.|:|:.      .:..||:.:..|.:       .::.|.:||   .::.....|
Zfish     3 CQAFS---TSDSFSGLG------GDTGAALPLLMHHSAAADCHNTNICSTVPSGLPLVQSSKRSH 58

  Fly   119 HH-------SMSGPPQRPLQENPFSRQM--HHSMDQLDMLDPTGSMTTLAPISESPLTPTHQHLH 174
            .|       :.|.....|:....:|.|.  :..|...:||..:.|.|.:......|    |.::.
Zfish    59 MHLSTSALGNASASLHYPMPPCHYSNQQTTYGMMAAQEMLSASISQTRILQTCSVP----HANMV 119

  Fly   175 GSYHSMNHMMS--------HHHPGTLSGHTGGHHGHSAVHHPVITAAVAAAGLH----------- 220
            ...:|:...::        |...|   |.....||.:.:...::|.......:.           
Zfish   120 NGANSLQGALAPRLYKFPEHSLAG---GSCALSHGFAPLPQTLLTDEPILGDIKQELRRKSRTLD 181

  Fly   221 --PDTDTDP-RELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGA-LSQSTICRFESLTLSH 281
              ||.|:.. ||||.||..||.||||||.||.:||:|||.:.    |: .||:||||||:|.||.
Zfish   182 ETPDMDSPQIRELEKFANDFKLRRIKLGYTQTNVGEALAAVH----GSEFSQTTICRFENLQLSF 242

  Fly   282 NNMIALKPILQAWLEEAEAQAK--NKRRDPDAPSVLPAGEKKRK-RTSIAAPEKRSLEAYFAVQP 343
            .|...||.||..||||||....  |::        :...|:||| ||:|:...|.:||..|..:.
Zfish   243 KNACKLKSILAKWLEEAEQAGALFNEK--------MGLHERKRKRRTTISLGAKEALERSFVEKS 299

  Fly   344 RPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRIVSSV 382
            :||.::|..:||.|.|:|.||||||||:||::||:.:|:
Zfish   300 KPSSQEIVRMAEGLHLEKEVVRVWFCNRRQREKRVKTSL 338

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
acj6NP_524876.1 POU 222..299 CDD:197673 44/78 (56%)
Homeobox 323..377 CDD:395001 26/54 (48%)
pou1f1NP_998016.1 POU 186..260 CDD:197673 43/77 (56%)
Homeobox 279..332 CDD:278475 25/52 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170592229
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3802
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.740

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