DRSC/TRiP Functional Genomics Resources

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Protein Alignment acj6 and pou3f3a

DIOPT Version :10

Sequence 1:NP_524876.1 Gene:acj6 / 47080 FlyBaseID:FBgn0000028 Length:396 Species:Drosophila melanogaster
Sequence 2:NP_571225.2 Gene:pou3f3a / 30386 ZFINID:ZDB-GENE-980526-220 Length:446 Species:Danio rerio


Alignment Length:345 Identity:126/345 - (36%)
Similarity:173/345 - (50%) Gaps:56/345 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 WSAR--------QNGDIFAGINDGILSRAEALAAVDIQKHQAQHV--HSQMPSQIKHDVMYHHHS 121
            ||:.        |..|:.:..|...|....||      .|:..|:  |....|........|..:
Zfish   104 WSSSPVGMAGSPQQQDVKSSSNREDLHSGTAL------HHRPSHLGAHQSHQSAWGGTTASHIST 162

  Fly   122 MSGPPQRPLQENPFSRQMHHSMDQLDMLDPTGSMTTLAPI-SESPLTPTHQHLHGSYHSMNHMMS 185
            ::|..|:..|...:|:....:::  .||:|.||:.....: .|||....|.|.|  :|...|  .
Zfish   163 ITGGQQQSQQSLIYSQPGGFTVN--GMLNPPGSLVHPGLMRGESPEMDHHHHHH--HHQQQH--P 221

  Fly   186 HHHPGTLSGHTGGHHGHSAVHHPVITAAVAAAGLHPDTDTDPR-ELEAFAERFKQRRIKLGVTQA 249
            |||          || |.  ||    |.|.:...|.|.||... :||.||::|||||||||.|||
Zfish   222 HHH----------HH-HQ--HH----AGVNSHDSHSDEDTPTSDDLEQFAKQFKQRRIKLGFTQA 269

  Fly   250 DVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALKPILQAWLEEAEAQAKNKRRDPDAPSV 314
            |||.||..|.   ....||:||||||:|.||..||..|||:|..|||||::...:    |.:...
Zfish   270 DVGLALGTLY---GNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSTTGS----PTSIDK 327

  Fly   315 LPA-GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRI 378
            :.| |.|::|||||....|.:||::|...|:||.::|.::|:.|.|:|.||||||||:|||:||:
Zfish   328 IAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLADNLQLEKEVVRVWFCNRRQKEKRM 392

  Fly   379 VSSVTP-------SMTGHGS 391
            .....|       :..|:||
Zfish   393 TPPGVPQTPEDVYTHAGNGS 412

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
acj6NP_524876.1 POU 222..299 CDD:197673 46/77 (60%)
Homeodomain 321..377 CDD:459649 28/55 (51%)
pou3f3aNP_571225.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 22..43
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 102..172 15/73 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 186..248 27/82 (33%)
POU 242..316 CDD:197673 45/76 (59%)
Homeodomain 335..391 CDD:459649 28/55 (51%)
Blue background indicates that the domain is not in the aligned region.

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