DRSC/TRiP Functional Genomics Resources

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Protein Alignment acj6 and Pou3f4

DIOPT Version :9

Sequence 1:NP_524876.1 Gene:acj6 / 47080 FlyBaseID:FBgn0000028 Length:396 Species:Drosophila melanogaster
Sequence 2:NP_058948.1 Gene:Pou3f4 / 29589 RGDID:61947 Length:361 Species:Rattus norvegicus


Alignment Length:322 Identity:112/322 - (34%)
Similarity:150/322 - (46%) Gaps:80/322 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   126 PQRPLQE----------NPFSRQMHHSMDQLDMLDPTGSMTTLAPISESPLTPTHQHL------- 173
            ||:.||.          :|..   ||.:..|....|..|....:|:.:..:.|..:.|       
  Rat    34 PQKLLQSDYLQGVPSNGHPLG---HHWVTSLSDGGPWSSTLATSPLDQQDVKPGREDLQLGAIIH 95

  Fly   174 HGSYHSMNHMMSHHHPG------------TLSGH-----------TGGHHGHSAVHHPVITAAVA 215
            |.|.|..:|....:||.            |.||.           ..|...|..:..|  .||.:
  Rat    96 HRSPHVAHHSPHTNHPNAWGASPAPNSSITSSGQPLNVYSQPGFTVSGMLEHGGLTPP--PAAAS 158

  Fly   216 AAGLHP----------------------DTDTDPRELEAFAERFKQRRIKLGVTQADVGKALANL 258
            ...|||                      :|.|.. |||.||::|||||||||.||||||.||..|
  Rat   159 TQSLHPVLREPPDHGELGSHHCQDHSDEETPTSD-ELEQFAKQFKQRRIKLGFTQADVGLALGTL 222

  Fly   259 KLPGVGALSQSTICRFESLTLSHNNMIALKPILQAWLEEAEAQAKNKRRDPDAPSVLPA-GEKKR 322
            .   ....||:||||||:|.||..||..|||:|..|||||::...:    |.:...:.| |.|::
  Rat   223 Y---GNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSSTGS----PTSIDKIAAQGRKRK 280

  Fly   323 KRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRIVSSVTP 384
            |||||....|..||.:|...|:|:.::|:::|:.|.|:|.||||||||:|||:||    :||
  Rat   281 KRTSIEVSVKGVLETHFLKCPKPAAQEISSLADSLQLEKEVVRVWFCNRRQKEKR----MTP 338

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
acj6NP_524876.1 POU 222..299 CDD:197673 46/76 (61%)
Homeobox 323..377 CDD:395001 27/53 (51%)
Pou3f4NP_058948.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 99..131 7/31 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 144..192 9/49 (18%)
POU 186..260 CDD:197673 46/77 (60%)
Homeobox 281..335 CDD:395001 27/53 (51%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 334..361 4/9 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166350534
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3802
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.740

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