DRSC/TRiP Functional Genomics Resources

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Protein Alignment acj6 and Pou3f2

DIOPT Version :9

Sequence 1:NP_524876.1 Gene:acj6 / 47080 FlyBaseID:FBgn0000028 Length:396 Species:Drosophila melanogaster
Sequence 2:NP_742082.2 Gene:Pou3f2 / 29588 RGDID:61946 Length:445 Species:Rattus norvegicus


Alignment Length:313 Identity:111/313 - (35%)
Similarity:148/313 - (47%) Gaps:61/313 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    96 QKHQAQHVHSQMPSQIKHDVMYHHHSMSG----------PPQRPLQENPFSRQMHHSMDQLDMLD 150
            |:.|.|....|.|..:.|....||.....          ||           .|..|...|....
  Rat   141 QQQQQQQQQQQRPPHLVHHAANHHPGPGAWRSAAAAAHLPP-----------SMGASNGGLLYSQ 194

  Fly   151 PTGSMTTLAPISESPLTPTHQHLHGSYHSMNHMMSHHHPGTLSGHTGGHH------------GHS 203
            |:.::..:......|....|..|..::...:|...|.||     |:..|.            ||.
  Rat   195 PSFTVNGMLGAGGQPAGLHHHGLRDAHDEPHHADHHPHP-----HSHPHQQPPPPPPPQGPPGHP 254

  Fly   204 AVHHPVITAAVAAAGLHPDTDTDPR-ELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALS 267
            ..||..          |.|.||... :||.||::|||||||||.||||||.||..|.   ....|
  Rat   255 GAHHDP----------HSDEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLY---GNVFS 306

  Fly   268 QSTICRFESLTLSHNNMIALKPILQAWLEEAEAQAKNKRRDPDAPSVLPA-GEKKRKRTSIAAPE 331
            |:||||||:|.||..||..|||:|..|||||::.:.:    |.:...:.| |.|::|||||....
  Rat   307 QTTICRFEALQLSFKNMCKLKPLLNKWLEEADSSSGS----PTSIDKIAAQGRKRKKRTSIEVSV 367

  Fly   332 KRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRIVSSVTP 384
            |.:||::|...|:||.::|.::|:.|.|:|.||||||||:|||:||    :||
  Rat   368 KGALESHFLKCPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEKR----MTP 416

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
acj6NP_524876.1 POU 222..299 CDD:197673 46/77 (60%)
Homeobox 323..377 CDD:395001 28/53 (53%)
Pou3f2NP_742082.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 63..173 8/31 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 203..269 17/80 (21%)
POU 264..338 CDD:197673 45/76 (59%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 336..361 7/28 (25%)
Homeobox 359..412 CDD:278475 28/52 (54%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 411..445 4/10 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166350527
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3802
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.740

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