DRSC/TRiP Functional Genomics Resources

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Protein Alignment acj6 and Pou6f1

DIOPT Version :9

Sequence 1:NP_524876.1 Gene:acj6 / 47080 FlyBaseID:FBgn0000028 Length:396 Species:Drosophila melanogaster
Sequence 2:XP_006520671.1 Gene:Pou6f1 / 19009 MGIID:102935 Length:610 Species:Mus musculus


Alignment Length:345 Identity:99/345 - (28%)
Similarity:152/345 - (44%) Gaps:70/345 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 SCDSLESRLLEDASLLCNSWSARQNGDIFAGINDGILSRAEALAAVDIQKHQAQHVHSQMPSQIK 112
            |...:.|::|.:|           .|.:. |....:::.|........|..|.|.|..|:....:
Mouse   309 SMPGISSQILTNA-----------QGQVI-GALPWVVNSASVATPAPAQSLQVQAVTPQLLLNAQ 361

  Fly   113 HDVMYHHHSMSGP-------PQRPLQENPFSRQMHHSMDQLDMLDPTGSMTTLAPISESPLTPTH 170
            ..|:....|...|       |..|  |:|       :..::..:.||.::...|.|..|| ||  
Mouse   362 GQVIATLASSPLPQPVAVRKPNTP--ESP-------AKSEVQPIQPTQAVPQPAVILTSP-TP-- 414

  Fly   171 QHLHGSYHSMNHMMSHHHPGTLSGHTGGHHGHSAVHHPVITAAVAAAGLH-PDTDTDP---RELE 231
                    ::....:...|.|.|            ..|.::..|:..  | |..|.|.   .|:.
Mouse   415 --------ALKPSAATPIPITCS------------ETPTVSQLVSKP--HTPSLDEDGINLEEIR 457

  Fly   232 AFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALKPILQAWLE 296
            .||:.||.||:.||:||..||:||...:.|   |.|||.|||||.|.::..:...|||:|:.||.
Mouse   458 EFAKNFKIRRLSLGLTQTQVGQALTATEGP---AYSQSAICRFEKLDITPKSAQKLKPVLEKWLM 519

  Fly   297 EAEAQAKNKRRD-----PDAPSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEK 356
            |||.:.:..:::     ...||     :|:::|||.......:|.|||...|.|:|::|..||::
Mouse   520 EAELRNQEGQQNLMEFVGGEPS-----KKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEIAKE 579

  Fly   357 LDLKKNVVRVWFCNQRQKQK 376
            |:..:.||||||||:||..|
Mouse   580 LNYDREVVRVWFCNRRQTLK 599

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
acj6NP_524876.1 POU 222..299 CDD:197673 35/79 (44%)
Homeobox 323..377 CDD:395001 25/54 (46%)
Pou6f1XP_006520671.1 PHA03247 <48..425 CDD:223021 27/147 (18%)
Pou 448..522 CDD:389985 34/76 (45%)
Homeobox 546..600 CDD:365835 25/54 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167847025
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3802
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.740

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