DRSC/TRiP Functional Genomics Resources

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Protein Alignment acj6 and Pou4f3

DIOPT Version :10

Sequence 1:NP_524876.1 Gene:acj6 / 47080 FlyBaseID:FBgn0000028 Length:396 Species:Drosophila melanogaster
Sequence 2:NP_620395.2 Gene:Pou4f3 / 18998 MGIID:102523 Length:338 Species:Mus musculus


Alignment Length:391 Identity:191/391 - (48%)
Similarity:226/391 - (57%) Gaps:84/391 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 MKMSAPSCF---PGRYSPSYRS----SEQMRR-CMPNPSIHISSSCDSLESRLLEDASLLCNSWS 68
            |.|:|...|   |....|.:.|    ||.||| |:|.|.:                         
Mouse     2 MAMNAKQPFGMHPVLQEPKFSSLHSGSEAMRRVCLPAPQL------------------------- 41

  Fly    69 ARQNGDIFAGINDGILSRAEALAAVDIQKHQAQHVHSQMPSQIKHDVMYHHHS----MSGPPQRP 129
               .|:||...::.:|:||||||||||..|...|       ..|.|..||..|    .|..|..|
Mouse    42 ---QGNIFGSFDESLLARAEALAAVDIVSHGKNH-------PFKPDATYHTMSSVPCTSTSPTVP 96

  Fly   130 LQENP--FSRQMHHSM------DQLDMLDPTGSMTTLAPISESPLTPTHQHLHGSYHSMNHMMSH 186
            : .:|  .:...||::      |.|:.:.||.|::.|.       .|.|..:....|.       
Mouse    97 I-SHPAALTSHPHHAVHQGLEGDLLEHISPTLSVSGLG-------APEHSVMPAQIHP------- 146

  Fly   187 HHPGTLSGH----TGGHHGHSAVHHPVITAAVAAAGLHPDTDTDPRELEAFAERFKQRRIKLGVT 247
            ||.|.: ||    .|..|.|:...|..:.|.::      |.::||||||||||||||||||||||
Mouse   147 HHLGAM-GHLHQAMGMSHPHAVAPHSAMPACLS------DVESDPRELEAFAERFKQRRIKLGVT 204

  Fly   248 QADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALKPILQAWLEEAEAQAKNKRRDPDAP 312
            |||||.||||||:||||:||||||||||||||||||||||||:||||||||||..:.|...|:  
Mouse   205 QADVGAALANLKIPGVGSLSQSTICRFESLTLSHNNMIALKPVLQAWLEEAEAAYREKNSKPE-- 267

  Fly   313 SVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 377
             :....|:||||||||||||||||||||:|||||.||||||||||||||||||||||||||||||
Mouse   268 -LFNGSERKRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 331

  Fly   378 I 378
            :
Mouse   332 M 332

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
acj6NP_524876.1 POU 222..299 CDD:197673 69/76 (91%)
Homeodomain 321..377 CDD:459649 53/55 (96%)
Pou4f3NP_620395.2 POU-IV box 56..65 8/8 (100%)
POU 179..256 CDD:197673 69/76 (91%)
Homeodomain 275..331 CDD:459649 53/55 (96%)

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