DRSC/TRiP Functional Genomics Resources

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Protein Alignment acj6 and Pou2f2

DIOPT Version :10

Sequence 1:NP_524876.1 Gene:acj6 / 47080 FlyBaseID:FBgn0000028 Length:396 Species:Drosophila melanogaster
Sequence 2:NP_001404061.1 Gene:Pou2f2 / 18987 MGIID:101897 Length:686 Species:Mus musculus


Alignment Length:396 Identity:124/396 - (31%)
Similarity:175/396 - (44%) Gaps:82/396 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 ISSSCDSLESRLLEDASLLCNSWSARQNGDIFAGINDGILSRAEALAAVDIQKHQAQHVHSQMPS 109
            :|:...:.:..||:.|.....:.:.:|:....|.     .:.|.|.|:.......|....||.|:
Mouse   112 LSALIPAQQQLLLQQAQAQLLAAAVQQSSAAAAN-----AAAAAAAASTSSSTSSASSSTSQTPA 171

  Fly   110 QIKHDVMYHHHSMSG---PPQRPLQENPFSRQMHHSMD-QLDMLDPTGSMTTLAPISESPLTPTH 170
                       |..|   ||.:|..:.|.:.|:..|.. ||...|    :..|..:.:..|.|.|
Mouse   172 -----------SSGGGDLPPSQPTSQPPGTPQLTLSQPIQLTAQD----IQQLLQLQQLVLVPGH 221

  Fly   171 QHLHGSYHSMNHMMSHHHPG--------TLSGHTGGHHGHSAVHHPVITAAVAAAGL-------- 219
             ||......:........||        .|...|.|          .:..:...|||        
Mouse   222 -HLQPPAQFLLPQAQQSQPGLLPTPNLFQLPQQTQG----------ALLTSQPRAGLPTQPPKCL 275

  Fly   220 ----HPDTDTDPRELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLS 280
                ||:..:|..|||.||..|||||||||.||.|||.|:.  ||.| ...||:||.|||:|.||
Mouse   276 EPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMG--KLYG-NDFSQTTISRFEALNLS 337

  Fly   281 HNNMIALKPILQAWLEEAEAQAKNKR----RDPDAPSV----LPAGEKKRKRTSIAAPEKRSLEA 337
            ..||..|||:|:.||.:||..:.:..    ....:||:    || |.:::|||||....:.:||.
Mouse   338 FKNMCKLKPLLEKWLNDAETMSVDSSLPSPNQLSSPSLGFDGLP-GRRRKKRTSIETNVRFALEK 401

  Fly   338 YFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRI----VSSVTPS-----------MT 387
            .|....:|:.|:|..|||:|.::|.|:||||||:|||:|||    .:.:.||           :|
Mouse   402 SFLANQKPTSEEILLIAEQLHMEKEVIRVWFCNRRQKEKRINPCSAAPMLPSPGKPTSYSPHLVT 466

  Fly   388 GHGSAG 393
            ..|.||
Mouse   467 PQGGAG 472

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
acj6NP_524876.1 POU 222..299 CDD:197673 42/76 (55%)
Homeodomain 321..377 CDD:459649 26/55 (47%)
Pou2f2NP_001404061.1 POU 282..356 CDD:197673 42/76 (55%)
Homeodomain 385..441 CDD:459649 26/55 (47%)
POU2F1_C <559..635 CDD:437368
Blue background indicates that the domain is not in the aligned region.

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