DRSC/TRiP Functional Genomics Resources

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Protein Alignment acj6 and pdm3

DIOPT Version :10

Sequence 1:NP_524876.1 Gene:acj6 / 47080 FlyBaseID:FBgn0000028 Length:396 Species:Drosophila melanogaster
Sequence 2:XP_061509788.1 Gene:pdm3 / 1280360 VectorBaseID:AGAMI1_003138 Length:871 Species:Anopheles gambiae


Alignment Length:461 Identity:119/461 - (25%)
Similarity:188/461 - (40%) Gaps:129/461 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 SAPSCFPGRYSPSYRSSEQMRRCM--------PNPSIHISSSCDSLESRLLEDASLLCNSWSARQ 71
            |.|:.:....|..|..|..::|.:        ..||...|.|..|....|..:.....::.|.|.
Mosquito   444 SRPASYASCSSSPYDKSMTLKRALSPPATLNCTTPSSSSSGSGHSSNGHLQVNVHSAISAASPRS 508

  Fly    72 NGDIFAGIN---------DGILSRAE------ALAAVDIQKHQ-AQHVHSQMPSQIKHDVMYHHH 120
            ..|..| ||         |.:.|:::      :.:.:.:.|.| :.|.|:.:..       .|||
Mosquito   509 PSDASA-INRLGLPTGGVDLLPSKSKLSPGGSSSSGLPLTKDQPSSHPHASVSP-------LHHH 565

  Fly   121 SMSGPPQ-----RP-------LQENPFSRQMHH---SMDQLDMLDPT--GSMTTLAPISESPLTP 168
            |.|||..     ||       ::::...:|.||   |.|.|::..|:  ||.:            
Mosquito   566 SSSGPSAPGSTGRPGSCDLELIEQHQHQQQQHHRAPSADDLELEKPSTVGSSS------------ 618

  Fly   169 THQHLHGSYHSMNHMMSHHH-----PGTLS--GHTGGHHGHS------AVHHPVITAAVAAAGLH 220
                  |:.|.: ...|||.     |..||  |.| |...||      |.:|..:..       |
Mosquito   619 ------GTVHQL-QKRSHHSAASTPPPKLSPAGST-GRLSHSDDDDDDASNHEFLEE-------H 668

  Fly   221 PDTDT------------DPRELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTIC- 272
            |:..|            |..:::.||:.||.||:.||:||..||:||:..:.|   |.|||.|| 
Mosquito   669 PNELTINQTNCNVVDGIDLDDIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGP---AYSQSAICS 730

  Fly   273 ------------------RFESLTLSHNNMIALKPILQAWLEEAEAQAKNKRRD-----PDAPSV 314
                              .||.|.::..:...:||:|:.|::|||....::.:.     ||...|
Mosquito   731 ALAAQMYCAAQLSSQQQQMFEKLDITPKSAQKIKPVLERWMKEAEESHSSRYKSGQNHVPDFIGV 795

  Fly   315 LPAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRIV 379
            .|: :|:::|||........|..:|.....|||.:|..:|.:|..::.|:|:||||:||..|..|
Mosquito   796 EPS-KKRKRRTSFTPQALELLNGHFERNTHPSGTEITGLAHQLGYEREVIRIWFCNKRQALKNTV 859

  Fly   380 SSVTPS 385
            ..::.|
Mosquito   860 RMMSKS 865

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
acj6NP_524876.1 POU 222..299 CDD:197673 31/107 (29%)
Homeodomain 321..377 CDD:459649 19/55 (35%)
pdm3XP_061509788.1 None

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