DRSC/TRiP Functional Genomics Resources

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Protein Alignment acj6 and pou4f3

DIOPT Version :9

Sequence 1:NP_524876.1 Gene:acj6 / 47080 FlyBaseID:FBgn0000028 Length:396 Species:Drosophila melanogaster
Sequence 2:XP_002935313.1 Gene:pou4f3 / 100498313 XenbaseID:XB-GENE-853641 Length:337 Species:Xenopus tropicalis


Alignment Length:374 Identity:187/374 - (50%)
Similarity:223/374 - (59%) Gaps:80/374 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 RYSPSYRSSEQMRR-CMPNPSIHISSSCDSLESRLLEDASLLCNSWSARQNGDIFAGINDGILSR 86
            :|...:.|||.||| |:|.|.:                            .|:||.|.::.:|.|
 Frog    20 KYPSLHSSSEAMRRVCLPAPQL----------------------------QGNIFGGFDENLLVR 56

  Fly    87 AEALAAVDIQKHQAQHVHSQMPSQIKHDVMYHHHSMSGPP------QRPLQE-NPFSRQMHHSMD 144
            |||||||||..|...|       ..|.|..|  |:|||.|      ..||.. :..:...|||:.
 Frog    57 AEALAAVDIVSHGKSH-------HYKPDASY--HTMSGIPCTSSSSAVPLSHPSALTAHPHHSVH 112

  Fly   145 QL---DMLDPTGSMTTLAPISESPLTPTHQHLHGSYH--SMNHM-----MSHHHPGTLSGHTGGH 199
            |.   |:||......|::.:..|..|.....|| .:|  :|.|:     |.|.||      ...|
 Frog   113 QCLEGDLLDHISPTLTVSGMGASDHTVMSSQLH-PHHLGAMGHLHQAMGMGHPHP------VSSH 170

  Fly   200 HGHSAVHHPVITAAVAAAGLHPDTDTDPRELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVG 264
            :|.|.::               |.::|||||||||||||||||||||||||||.||||||:||||
 Frog   171 NGMSCIN---------------DVESDPRELEAFAERFKQRRIKLGVTQADVGSALANLKIPGVG 220

  Fly   265 ALSQSTICRFESLTLSHNNMIALKPILQAWLEEAEAQAKNKRRDPDAPSVLPAGEKKRKRTSIAA 329
            :||||||||||||||||||||||||:|||||:||||..:.|...|:   :..:.|:|||||||||
 Frog   221 SLSQSTICRFESLTLSHNNMIALKPVLQAWLDEAEAAYREKNAKPE---LFNSSERKRKRTSIAA 282

  Fly   330 PEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRI 378
            ||||||||||::|||||.||||||||||||||||||||||||||||||:
 Frog   283 PEKRSLEAYFSIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 331

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
acj6NP_524876.1 POU 222..299 CDD:197673 68/76 (89%)
Homeobox 323..377 CDD:395001 50/53 (94%)
pou4f3XP_002935313.1 POU 178..255 CDD:197673 68/76 (89%)
Homeobox 276..330 CDD:365835 50/53 (94%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 141 1.000 Domainoid score I4673
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2023
Inparanoid 1 1.050 304 1.000 Inparanoid score I2611
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D396215at33208
OrthoFinder 1 1.000 - - FOG0001337
OrthoInspector 1 1.000 - - otm49366
Panther 1 1.100 - - O PTHR11636
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2889
SonicParanoid 1 1.000 - - X830
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1212.100

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