DRSC/TRiP Functional Genomics Resources

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Protein Alignment acj6 and pou2f2

DIOPT Version :10

Sequence 1:NP_524876.1 Gene:acj6 / 47080 FlyBaseID:FBgn0000028 Length:396 Species:Drosophila melanogaster
Sequence 2:XP_002936445.2 Gene:pou2f2 / 100497329 XenbaseID:XB-GENE-876751 Length:658 Species:Xenopus tropicalis


Alignment Length:430 Identity:134/430 - (31%)
Similarity:186/430 - (43%) Gaps:93/430 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 SMYSTTDKMKMSAPSCFPGRYSPSYRSSEQMRRCMPNPSIHISSS--------CDSLESRLLEDA 60
            |:.||......|||   |...:|.  :.:|....:|...:.::.|        ..:.:..||:.|
 Frog    90 SLPSTPVPQMPSAP---PTPQAPP--APQQPPTSLPQTQLLLAGSQLAGLTALLPAQQQLLLQQA 149

  Fly    61 SLLC-------NSWSARQNGDIFAGINDGILSRAEALAAVDIQKHQ---AQHVH-----SQMPSQ 110
            .||.       .:.||.|:|           |.::.|.....|.||   :|.:|     .|...|
 Frog   150 QLLAAAVQQSSAAASATQSG-----------SDSQTLPTSQQQPHQLALSQPIHLTAQDIQQLLQ 203

  Fly   111 IKHDVMYHHHSMSGPPQRPLQENPFSRQMHHSMDQLDMLDPTGSMTTLAPISESPLTPTHQHLHG 175
            ::..|:...|.:...||..|.:....:|...|...|..| |..:...|......|..||      
 Frog   204 LQQLVLVPGHPLQSTPQFLLPQAGQGQQGLISAPNLFQL-PQQNQGNLLSGQPRPSLPT------ 261

  Fly   176 SYHSMNHMMSHHHPGTLSGHTGGHHGHSAVHHPVITAAVAAAGLHPDTDTDPRELEAFAERFKQR 240
                    .:...||:.......|...::               ||:...|..|||.||..||||
 Frog   262 --------QAVSRPGSQDTPLLSHSDQTS---------------HPEEPNDLEELEQFARTFKQR 303

  Fly   241 RIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALKPILQAWLEEAEAQAKNK 305
            |||||.||.|||.|:.  ||.| ...||:||.|||:|.||..||..|||:||.||.:||..:.  
 Frog   304 RIKLGFTQGDVGLAMG--KLYG-NDFSQTTISRFEALNLSFKNMCKLKPLLQKWLSDAETMSV-- 363

  Fly   306 RRDPDAPSVLP-----------AGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDL 359
              |...||..|           .|.:::|||||....:.:||..|....:|:.|:|..|||:|.:
 Frog   364 --DSTLPSPNPLSSPGGGYEGLPGRRRKKRTSIETNVRYALEKSFIANQKPTSEEILVIAEQLKM 426

  Fly   360 KKNVVRVWFCNQRQKQKRI----VSSVTPSMTGHGSAGFG 395
            :|.|:||||||:|||:|||    .:.:||:. |.||. ||
 Frog   427 EKEVIRVWFCNRRQKEKRINPCSSTPLTPTQ-GKGSL-FG 464

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
acj6NP_524876.1 POU 222..299 CDD:197673 43/76 (57%)
Homeodomain 321..377 CDD:459649 26/55 (47%)
pou2f2XP_002936445.2 POU 285..359 CDD:197673 43/76 (57%)
Homeodomain 388..444 CDD:459649 26/55 (47%)
POU2F1_C <548..624 CDD:437368
Blue background indicates that the domain is not in the aligned region.

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