DRSC/TRiP Functional Genomics Resources

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Protein Alignment acj6 and pou2f3

DIOPT Version :9

Sequence 1:NP_524876.1 Gene:acj6 / 47080 FlyBaseID:FBgn0000028 Length:396 Species:Drosophila melanogaster
Sequence 2:XP_031762183.1 Gene:pou2f3 / 100490595 XenbaseID:XB-GENE-853632 Length:506 Species:Xenopus tropicalis


Alignment Length:429 Identity:136/429 - (31%)
Similarity:191/429 - (44%) Gaps:106/429 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 KMKMSAPS-CF-PGRYSPSYRSSEQMRRCMPNPSIHISSSCDSLESRLLEDASLLCNSWSARQNG 73
            ::::|.|| |. |..:||....|||     ..|:.||...........:...||.|...:.:...
 Frog    28 ELEISLPSLCLDPLPFSPPLCHSEQ-----TEPAEHIEPGEHIEPEEYILYVSLPCMMVNLQYTH 87

  Fly    74 DIFAGINDGILSRAEALAAVDIQKHQAQHVHSQMPSQIKHDVM----------YHHHSMSGPPQR 128
            .:.:.||   :|| |..:.|     :.||....:.:..:.|.:          :.....||.|.|
 Frog    88 PVPSHIN---MSR-EPDSTV-----EQQHGSGNLENDTERDTLDFGKQIKTEDFSEALQSGIPHR 143

  Fly   129 PLQENPFSRQMHHSMDQLDML---DPTGSMTTLAPISESPLTPTH----------QHLHGSYHSM 180
            |..           :.|..|:   ..:|.||:|.|:.:..|.|:|          |...|....:
 Frog   144 PCH-----------LSQGSMIGGGQMSGEMTSLHPLQQLVLVPSHLQPASPYLLSQSQSGQQGLL 197

  Fly   181 --NHM-MSHHHPGTLSGHTG-------------------GH----HGHSAVHHPVITAAVAAAGL 219
              ||: :|....|.|...||                   .|    |.|...|.|::         
 Frog   198 QPNHLSLSQQQGGILQPQTGLGLASQAVGRPGLPGSPLESHLEMGHLHVPKHLPMV--------- 253

  Fly   220 HPDTDTDPRELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNM 284
             ||..:|..|||.||:.|||||||||.||.|||.|:.  ||.| ...||:||.|||:|.||..||
 Frog   254 -PDEPSDLEELEKFAKTFKQRRIKLGFTQGDVGLAMG--KLYG-NDFSQTTISRFEALNLSFKNM 314

  Fly   285 IALKPILQAWLEEAEAQAKNKRRDPDAPSVLPA----------GEKKRKRTSIAAPEKRSLEAYF 339
            ..|||:|:.||.:||:.       |...::.|:          |.|::|||||....:.:||..|
 Frog   315 CKLKPLLEKWLNDAESA-------PSDAALTPSTNYAQLSEMFGRKRKKRTSIETNIRLTLEKRF 372

  Fly   340 AVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRI 378
            ...|:||.|:|:.|||:|.::|.||||||||:|||:|||
 Frog   373 QDNPKPSSEEISMIAEQLVMEKEVVRVWFCNRRQKEKRI 411

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
acj6NP_524876.1 POU 222..299 CDD:197673 43/76 (57%)
Homeobox 323..377 CDD:395001 29/53 (55%)
pou2f3XP_031762183.1 POU 255..329 CDD:197673 43/76 (57%)
Homeobox 356..410 CDD:395001 29/53 (55%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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