DRSC/TRiP Functional Genomics Resources

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Protein Alignment acj6 and pou3f4

DIOPT Version :9

Sequence 1:NP_524876.1 Gene:acj6 / 47080 FlyBaseID:FBgn0000028 Length:396 Species:Drosophila melanogaster
Sequence 2:NP_001090728.1 Gene:pou3f4 / 100036711 XenbaseID:XB-GENE-479667 Length:360 Species:Xenopus tropicalis


Alignment Length:337 Identity:115/337 - (34%)
Similarity:158/337 - (46%) Gaps:71/337 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   109 SQIKHD-VMYHHHSMSGPPQRPLQE----------NPFSRQMHHSMDQLDMLDPTGSMTTLAPIS 162
            |.:.|| .:....|....||:.||.          :|..   ||.:..|...:|..:....:|:.
 Frog    15 SSLVHDSAIMQQGSPFRNPQKLLQSDYLQGVPSNGHPLG---HHWVTSLSDANPWSTSLGSSPLD 76

  Fly   163 ESPLTPTHQHL-------HGSYHSMNHMMSHHHPG---------------------------TLS 193
            :..:.|..:.|       |.|.|..:|....:||.                           |:|
 Frog    77 QQDIKPGREDLQLGAIIHHRSPHVTHHSPHTNHPNAWGASPAHNSSLTSNGQPINVYSQSGFTVS 141

  Fly   194 G---HTG----GHHGHSAVHHPVITAAVAAAGL-------HPDTDTDPR-ELEAFAERFKQRRIK 243
            |   |.|    ...|.:...|||:...|....|       |.|.:|... |||.||::|||||||
 Frog   142 GMLDHGGLTPPPPSGTTQSLHPVLREPVDHGDLGSHHCQDHSDEETPTSDELEQFAKQFKQRRIK 206

  Fly   244 LGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALKPILQAWLEEAEAQAKNKRRD 308
            ||.||||||.||..|.   ....||:||||||:|.||..||..|||:|..|||||::...:    
 Frog   207 LGFTQADVGLALGTLY---GNVFSQATICRFEALQLSFKNMCKLKPLLNKWLEEADSSTGS---- 264

  Fly   309 PDAPSVLPA-GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQR 372
            |.:...:.| |.|::|||||....|..||.:|...|:|:.::|:::|:.|.|:|.||||||||:|
 Frog   265 PTSIDKIAAQGRKRKKRTSIEVSVKGVLETHFLKCPKPAAQEISSLADSLQLEKEVVRVWFCNRR 329

  Fly   373 QKQKRIVSSVTP 384
            ||:||:.....|
 Frog   330 QKEKRMTPPGDP 341

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
acj6NP_524876.1 POU 222..299 CDD:197673 46/77 (60%)
Homeobox 323..377 CDD:395001 27/53 (51%)
pou3f4NP_001090728.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 98..130 4/31 (13%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 143..191 11/47 (23%)
POU 185..259 CDD:197673 45/76 (59%)
Homeobox 280..333 CDD:306543 27/52 (52%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 332..360 3/10 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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