DRSC/TRiP Functional Genomics Resources

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Protein Alignment NCL and PAB1

DIOPT Version :10

Sequence 1:NP_005372.2 Gene:NCL / 4691 HGNCID:7667 Length:710 Species:Homo sapiens
Sequence 2:NP_011092.1 Gene:PAB1 / 856912 SGDID:S000000967 Length:577 Species:Saccharomyces cerevisiae


Alignment Length:374 Identity:94/374 - (25%)
Similarity:166/374 - (44%) Gaps:49/374 - (13%)


- Green bases have known domain annotations that are detailed below.


Human   286 KQKAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKNDL-----AVVDVRIGM 345
            :::||..::.|.||    .::.:|:||:|..:.|...|....|.:.:.:.:     |:....:| 
Yeast    21 QKQAATGSESQSVE----NSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLG- 80

Human   346 TRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGKDSKKERDARTLLAKNLPYKVTQDEL 409
               :.||:|...|...||:| |....:.|...::...:...|.:::.:..:..|||...:....|
Yeast    81 ---YAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKAL 142

Human   410 KEVFEDAAEIRLVSK-----DGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQ 469
            .:.|....:| |.||     :|||||..::.|:.|..|::..:...|..::|:.|  |......:
Yeast   143 YDTFSVFGDI-LSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEI--YVAPHLSR 204

Human   470 NQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFA 531
            .:  |..:..........|.:.|::...|:|..||:|.|   .....:.::.:||.||:.|:.:.
Yeast   205 KE--RDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYE 267

Human   532 SFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSK-----------------TLFVKGL 579
            ..|||.:|:.:.|..|:.|..:.:   |.....|.|....|                 .||||.|
Yeast   268 KHEDAVKAVEALNDSELNGEKLYV---GRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNL 329

Human   580 SEDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAA 626
            .:...:|.|:|.|.  |::.:..|...|.|.|||||||.|::.|:|..|
Yeast   330 DDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKA 378

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NCLNP_005372.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..303 5/16 (31%)
8 X 8 AA tandem repeats of X-T-P-X-K-K-X-X 58..135
RRM1_NCL 307..381 CDD:409837 18/79 (23%)
RRM2_NCL 390..465 CDD:409838 21/79 (27%)
RRM3_NCL 485..557 CDD:409839 20/74 (27%)
RRM4_NCL 572..649 CDD:409840 25/74 (34%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 640..710
PAB1NP_011092.1 PABP-1234 38..559 CDD:130689 89/353 (25%)
Blue background indicates that the domain is not in the aligned region.

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