DRSC/TRiP Functional Genomics Resources

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Protein Alignment NCAM1 and side-III

DIOPT Version :10

Sequence 1:NP_001387553.1 Gene:NCAM1 / 4684 HGNCID:7656 Length:1129 Species:Homo sapiens
Sequence 2:NP_001036681.1 Gene:side-III / 4379844 FlyBaseID:FBgn0083949 Length:1689 Species:Drosophila melanogaster


Alignment Length:1338 Identity:256/1338 - (19%)
Similarity:442/1338 - (33%) Gaps:428/1338 - (31%)


- Green bases have known domain annotations that are detailed below.


Human     8 IWTLFFLGTAVSL---QVDIVPSQGEIS-------VGESKFFLCQVAGDAKDKD---ISWFSPN- 58
            ::.||.....:||   |:|.......:|       :|.:....|.:..:|||..   :.||..: 
  Fly    28 LFALFLFAAHISLTSGQIDWDDDDDPVSTVAVEAVLGRTASLPCDIEPEAKDDRVYMVLWFRESA 92

Human    59 GEKL-------TPNQQRISVVWNDDSS-------------STLTIYNANIDDAGIYKCVVTGEDG 103
            |:.|       .|.::  ::.|:|.:|             :.|::.|..:||.|:|:|.|..::.
  Fly    93 GKPLYSFDVRGRPFEK--ALYWSDTNSFGPRAYFVTGQQPAKLSVDNIQLDDEGVYRCRVDFQNS 155

Human   104 SESEATVNVKIF----QKLMF-------KNAPTPQEFREGEDAVIVCDVVSSLP-PTIIWKHKGR 156
            ......:|:.:.    |.|::       ..|..|  ..||::.|:.|:|....| ||:.|.:..|
  Fly   156 PTRNHRINLTVIVPPHQILVYDASGRDVAGAVGP--LLEGDNIVLTCEVRGGRPEPTVTWMNGTR 218

Human   157 DVILKKDV---RFIVLSNNYLQIRGIKKTD-EGTYRCEG---RILARGEINFKDIQVIVNVPPTI 214
            .:.....|   |.:.:  |.|::..|.::. ..||||:.   :::|..|   :.|::.:.:.|| 
  Fly   219 TLEAGSGVSMGRHVTV--NRLEVAQISRSALNNTYRCQASNTKLVAPVE---RSIRIEMLLKPT- 277

Human   215 QARQNIVNATANL-----GQSVTLVCDAEG-FPEPTMSWTKDGEQIEQ-----EEDDEKYIFSDD 268
                 .||.|..|     .....|.|...| .|:..:.||::....::     .:.:.:.|    
  Fly   278 -----SVNLTNKLKVFASNTQYNLTCIVAGSVPDTEIKWTQNNRPFKRGLLSTSQSNGRVI---- 333

Human   269 SSQLTIKKVDKNDEAEYICIAENKAGEQDA---TIHLKVFAKPKITYVENQTAM--ELEE--QVT 326
             |.||.....::|.....|...|...:..|   ::.:.|...|::|.....|..  :::|  .|.
  Fly   334 -STLTFYPQPEDDGTMLKCEGSNPRLQNSAIEDSLMMNVIYPPQVTLSLGSTLRPDDIKEGDDVY 397

Human   327 LTCEASGDPIPSITWRTSTRNISSEEKASWTRPEKQETLDGHMVVRSHA-----RVSSLTLKSIQ 386
            ..|....:|              .|.:..|:.       ||..|.::.:     ...||.|:.:.
  Fly   398 FECHIKSNP--------------KEHRIMWSH-------DGQPVTQNVSWGIIISTRSLVLQRVG 441

Human   387 YTDAGEYICTASNTIGQ-DSQSMYLEVQYAP------------KLQGPVAV------------YT 426
            ...:|.|.|:|:|..|: .|..:.|.::|||            .|:..|.:            :.
  Fly   442 RIHSGFYACSAANDRGETQSAPVNLRIRYAPVCSSSSITVIGASLEEDVPIPCRVNSDPPEIDFE 506

Human   427 WEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSN--IKIYNTPSASYLEV------TPDSEND 483
            |   ..:.:.|.|..||...:..:|..:..:|:...  ::...|...||:|.      ||..|.|
  Fly   507 W---TFSTSGEHFEVPSGHYATIQDPTMTTTSDVRRTVVESNETHFESYVETVSELIYTPKGERD 568

Human   484 FGNYNCTAVNRIGQES--LEFILVQADTPSSPSIDQVEPYSSTA-----------------QVQF 529
            :|...|...|.||::|  ..|.:|.|..|.:.....:.||..|:                 ..|:
  Fly   569 YGTLACYGRNAIGKQSDPCVFQVVPAAKPGALRNCTLRPYVVTSASLNSSNQTTMHANQILPTQY 633

Human   530 DEPEATGGVPILKYKAEWR------------AVGEEVWHSKWYDAKEASMEGIVT---------- 572
            ...|:  ..|.::|..|..            |.|..       :....:|.|..:          
  Fly   634 GRHES--NYPHMEYVRERHNSSGGNNNGTAPAAGRN-------NVANKNMRGRTSAGQAKSNNKQ 689

Human   573 -----IVGLKPETTY--AVRLAAL-NGKGLGEISAASEFKTQPVREPSAPKLEGQMGEDGNSIKV 629
                 :..||..|::  :..|||: ..:...::|...:...|...:.:|.|..|....|      
  Fly   690 LTQQQLQRLKKRTSFTPSQTLAAIERQRQRKQLSQQQQQLQQQHHQATATKSGGDNKPD------ 748

Human   630 NLIKQDDGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKA 694
                    |||.:....|.|..|.:  |:|:  ....|                 .:.||.:..|
  Fly   749 --------GSPAKSSKQRMRRASRD--PQIQ--QQQQH-----------------QQQQQHQLHA 784

Human   695 AHFVFRTSAQPTAIPANGSPTSGLSTGAIVGILIVIFVLLLVVVDITCYFLNKCGLFMCIAVNLC 759
            |..:  ||:|.....:|.| ||.|..|                                      
  Fly   785 ATSI--TSSQRKQAESNLS-TSHLGKG-------------------------------------- 808

Human   760 GKAGPGAKGKDMEEGKAAFSKDESKEPIVEVRTEEERTPNHDGGKHTEPNETTPLTEPELPADTT 824
              :...::.:...........:..|:|   .:...:|..|....||.:..:....|..|      
  Fly   809 --SSSSSRSRRSSSSNINSKSNNGKQP---AKYFNKRQKNMHKQKHQQKLKQLKGTTNE------ 862

Human   825 ATVEDMLPSVTTVTTNSDTITETFATAQNSPTSETTTLTSSIAPPATATPDSNSVPAGQATPSKG 889
                           ::..|...:|...:|.........:.|.....|...|.|:       |..
  Fly   863 ---------------HNSNIIHHYAALSSSLRRRKRLAANDILATVAAASTSASL-------SSP 905

Human   890 PSASAPSPAPASAPKVAPLVDLS--DTPTSTPAASNLSS----SVL------ANQGAVLSPSAPA 942
            |::||.|.|..:...|....|:|  |.|.:...::|..|    ::|      ..|..:|.|:|| 
  Fly   906 PASSAASLAATATAAVEIEQDVSAVDAPAADSGSNNKRSRKSLTILDKQKQQQEQQQLLPPNAP- 969

Human   943 GVGEASKAPPAS------KPTPAPVPTPTGAASPLAAAAAPATEAPQAKQEA-----PSTKGPDP 996
               :.|..|.|:      |.|.|     |.|..  |.||....:||.:|:::     .|....|.
  Fly   970 ---QISNQPVAAISGNNVKETAA-----TSAHG--AVAAGVKDKAPSSKEDSTDNDNDSDGDEDD 1024

Human   997 EPTQPGAAKSPAEAATALASPKSEAASVSTTNPSQGEDFKMDEGNFKTPDIDLAKDVFAALGSPA 1061
            :......|:..||              ..|.:..:.||   :.|.....|.||.:|| |.|.:.|
  Fly  1025 DDDDDDGAEIDAE--------------TETNDEEEDED---EGGEAHDDDADLDEDV-AQLATDA 1071

Human  1062 P--AAG------------ASGQA-----------------------------------------P 1071
            .  |.|            ..|||                                         .
  Fly  1072 DYLADGPGDLQEYETVEEVDGQAKHVHMLSLEEQLDLESLEDNVEEEDDGEVDDMYNVSDDDFVA 1136

Human  1072 ELAPSTADSSVSPAPAKTEKGP-VEAKPECQETETKPA 1108
            .:|.||:|::.:....:|.:|| :..|....:|:|..|
  Fly  1137 SVALSTSDTTAATPLQRTTEGPHIREKATQSQTQTDSA 1174

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NCAM1NP_001387553.1 IgI_1_NCAM-1 20..116 CDD:409451 26/133 (20%)
Ig strand A 20..25 CDD:409451 3/7 (43%)
Ig strand A' 28..32 CDD:409451 0/3 (0%)
Ig strand B 34..44 CDD:409451 2/9 (22%)
Ig strand C 50..56 CDD:409451 1/8 (13%)
Ig strand C' 59..61 CDD:409451 1/1 (100%)
Ig strand D 69..75 CDD:409451 1/5 (20%)
Ig strand E 77..85 CDD:409451 2/20 (10%)
Ig strand F 92..100 CDD:409451 4/7 (57%)
Ig strand G 104..115 CDD:409451 1/10 (10%)
IG_like 124..190 CDD:214653 19/70 (27%)
Ig strand B 135..139 CDD:409353 1/3 (33%)
Ig strand C 148..152 CDD:409353 1/3 (33%)
Ig strand E 172..176 CDD:409353 2/3 (67%)
Ig 211..307 CDD:472250 21/109 (19%)
Ig strand B 231..235 CDD:409353 1/3 (33%)
Ig strand C 244..248 CDD:409353 0/3 (0%)
Ig strand E 270..274 CDD:409353 2/3 (67%)
Ig strand F 284..289 CDD:409353 1/4 (25%)
Ig strand G 297..300 CDD:409353 1/5 (20%)
IgI_NCAM-1 306..412 CDD:143277 23/115 (20%)
Ig strand A 306..311 CDD:143277 1/4 (25%)
Ig strand A' 315..319 CDD:143277 1/3 (33%)
Ig strand B 324..332 CDD:143277 2/7 (29%)
Ig strand C 338..344 CDD:143277 0/5 (0%)
Ig strand C' 347..350 CDD:143277 0/2 (0%)
Ig strand D 368..374 CDD:143277 1/5 (20%)
Ig strand E 377..383 CDD:143277 2/5 (40%)
Ig strand F 391..399 CDD:143277 4/7 (57%)
Ig strand G 402..412 CDD:143277 3/10 (30%)
IG_like 421..499 CDD:214653 21/97 (22%)
Ig strand B 432..436 CDD:409353 0/3 (0%)
Ig strand C 445..449 CDD:409353 0/3 (0%)
Ig strand E 472..476 CDD:409353 2/3 (67%)
Ig strand F 486..491 CDD:409353 1/4 (25%)
fn3 511..598 CDD:394996 18/133 (14%)
fn3 612..693 CDD:394996 15/80 (19%)
PRK12323 <913..1108 CDD:481241 56/271 (21%)
side-IIINP_001036681.1 V-set 59..166 CDD:462230 22/108 (20%)
Ig_3 190..257 CDD:464046 19/68 (28%)
Ig 289..359 CDD:472250 13/74 (18%)
Ig strand C 308..312 CDD:409468 0/3 (0%)
Ig strand E 335..338 CDD:409468 1/2 (50%)
Ig strand F 348..353 CDD:409468 1/4 (25%)
Ig_3 374..454 CDD:464046 19/100 (19%)

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