DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dlt and Cdan1

DIOPT Version :9

Sequence 1:NP_728672.1 Gene:dlt / 46719 FlyBaseID:FBgn0024510 Length:1240 Species:Drosophila melanogaster
Sequence 2:XP_038962744.1 Gene:Cdan1 / 311348 RGDID:1306771 Length:1230 Species:Rattus norvegicus


Alignment Length:1332 Identity:315/1332 - (23%)
Similarity:495/1332 - (37%) Gaps:329/1332 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 EDFATYFLGALRQSTKRYYYSQNSETPVFPLTPIHQLKPPVADVVKEEEQQQLNESSILSRS--- 119
            ::|..:.|..||:.:.|          |.|..|....|.|.|.......|.........:||   
  Rat    46 KEFVPFLLNFLREQSSR----------VLPQGPSTPAKTPGASAALPARQGAPPRGGRGARSQLF 100

  Fly   120 -SCSMSSTSNTTPAPQQPQGRRSTPGSGAQFCSTPNRS-GGGGAGGGHSICLGNFLVNTPIQSHQ 182
             :....|||...|..:: .|||..||        |:|. ||.|:||...   |....:.|....:
  Rat   101 PATEPLSTSAEAPLARR-AGRRRGPG--------PSRERGGRGSGGPEE---GASSESPPWAGGR 153

  Fly   183 RSKKKITPQKQQQN-----------QHASLGSGTGAGATPQSKPRRRVLPMTISKNVSASS---- 232
            :.|...:|...:.:           :...:|: ...|:..::||.||:.|..:|:..|.|.    
  Rat   154 KPKGSGSPGSPRLSLSDPPNLSNLEEFPPVGT-VPPGSAGRTKPSRRINPTPVSEERSLSKPKTC 217

  Fly   233 --------------SFGDTSSFSNENNFWRISQSSEIFDRSQEAALEMEARKFLLLKKQEIKSEA 283
                          |..|||.       |.:..........:|..:..:||     .||..:|..
  Rat   218 FTSPPISCVPSSQPSALDTSP-------WGLGLPPGCRSLQEEREMLRKAR-----SKQLQQSPT 270

  Fly   284 PVNVSQQERTPEDEVFPEEAISLEG-------VANANHLQLLSTIYSLLMDLNLVPNVLRELSFV 341
            |...:....:|    .|....:|..       |::...|:|::.|||..:..|||||:..||.||
  Rat   271 PACPAPDSGSP----VPNRTGNLTAEPADPARVSSRQRLELVALIYSSCIAENLVPNLFLELFFV 331

  Fly   342 VHLLNVRDFGQSPVKSYVPS--ALEGL------TQHKSCVYFAAKLLENQKKLLLQLDKRTLSVL 398
            :.||..|....:.......|  ||:.|      :.| .||:||.::||:|.::|..|||.||.:|
  Rat   332 LQLLTARRMAATKDSDLESSQGALDSLETPLFRSIH-DCVFFAVQVLEHQFQVLSYLDKGTLKLL 395

  Fly   399 LQNERL---SLLPQGVVQELETHCQRRQDSTTPFAMDTSSSSQQNVYYHVENDSRDNFPSQNEFG 460
            .:||||   |...||.::........:.....|       .|.|.|.:..|.|:|.||.|...|.
  Rat   396 AENERLLCFSPALQGRLRAAYEGSVAKVSLVIP-------PSAQAVSFQPETDNRANFSSDRAFH 453

  Fly   461 AFKSQRDLFYKALKRWEVSHLNRGFNFPSELGPRIMDIYKKSEHPVNMTHLAKLFVNQLL----- 520
            .||.|||:||:.|:.||..|....::|...||.||..:..:.....:.:|..:||..|||     
  Rat   454 TFKKQRDVFYEVLREWEDHHEEPSWDFEKGLGSRIRAMMGQLSAACSHSHFVRLFQKQLLQMCQS 518

  Fly   521 ---ISATETTESPEELGL----KLDPLRHNKLAQRLVTSSSS----VEGQFPRSQAFFRDFIAVC 574
               ...:...|:|:.|.:    ||..||  :|.:||:...||    ....||..|.||||||...
  Rat   519 PGGAGGSVLGEAPDVLNMLGADKLGRLR--QLQERLIAPQSSGGPCPPPTFPGCQGFFRDFIMSA 581

  Fly   575 SSVAFLVHLKLELFVQLMRNNDSTFDLLQLTDDVAVEEQSAQ----QGPYIVRVQTMANMLILAK 635
            ||..|..||...|.:::...|.     |:|......:|....    ||........:.::.:|||
  Rat   582 SSFHFNQHLMDSLSLKIRELNG-----LRLPQHEPGDEDGESDVDWQGERRQFAVVLLSLRLLAK 641

  Fly   636 FLGYVTVMPFSGTTQHGNPTPPYLCPQQLQLRNHFRPDFNLREILERSMRQGKLLITLPWLVQYL 700
            |||:|..:|:.|   |..|....|....|.||:...|..::|.:|::.:...:.::|:||||::|
  Rat   642 FLGFVAFLPYRG---HEPPPTRELQDSILALRSQVPPVLDIRALLQQGLWARRAVLTVPWLVEFL 703

  Fly   701 AMLDLVSLHLPDAVATLELLYGLYADIRMAKLQPAAV-----FIARSCIGWLLDAQPQLVNGYYN 760
            :..|.:...|....:...||..|:..:.::|.....:     .:..:.:|||... |.:....:.
  Rat   704 SFADHIVPLLDYYRSVFTLLLHLHRSLVLSKENEGEMCFLNKLLLLAVLGWLFQI-PTVPEDLFF 767

  Fly   761 YRAQEAGVGSISAI-VDICLKDLSCHDKSHAPLLD-ELLPVACPFLQEFR---VSITPSRQAKSG 820
            ...     |.:.|. ||....:   |.....|::| :||...||::.|.|   .|.......:||
  Rat   768 LED-----GQVDAFEVDTTTSE---HGLDSVPVVDQQLLYTCCPYIGELRKLLASWVSGSSGRSG 824

  Fly   821 RF-RYI----TTRLEQLQQNSSSISKDAIVASELSPAEQQQRKLVDAYLQSQNASTRRLIEFVTE 880
            .| |.|    ||.|..|               .|..::..|.:|.:|:..:|..|.||.:|||.|
  Rat   825 GFVRKITPTTTTSLGTL---------------PLKTSQGLQAQLAEAFFHNQPPSLRRTVEFVAE 874

  Fly   881 RTFKCVVKDAQQEILLPSKASADAKVNEIKSTMLEEVFQELHEIFQD--------------AREN 931
            |.....||                   .||:|::.::..:...:.|:              ..|.
  Rat   875 RIGSNCVK-------------------HIKATLVADLVHQAESLLQEQLVTRGQEGGDPAQLLEF 920

  Fly   932 ACQRWKEHVHQML-------DRRIEHSLDGLLPSSTNAVLRSTYAHLIRVQAQTQLQQWLQSSVL 989
            .|.:...|..|.|       .::...:|..|||..|.|.:.|:..::....|..:...||.::: 
  Rat   921 LCSQLCPHGAQALTQGREFCQKKSPTALRALLPEETPAAVLSSAENIAVGLATEKACSWLSANI- 984

  Fly   990 QSTFYHGDLQELATKVC--------------NCNRN---------------KADAAAAGGGGSSE 1025
             :.....:::...:::.              .|:|.               |...:.|.|....|
  Rat   985 -TALIRREVKAAVSRMLRAQGPEPTARVERRGCSRACEHHAPLPSHLISEIKDVLSLAAGPRDPE 1048

  Fly  1026 LQLSPDIGFSLSEFLYQLQQWLHCL-----SLRPEYVGSQEDLAELLRKAQKAVLLPKMPTVFYH 1085
            ..:||:   .|.:.|.||.|.|.|.     :..........:||.||...|..:|.|  ||  .|
  Rat  1049 EGVSPE---HLEQLLNQLGQSLKCRQFLCPTAEQHLAKCSVELASLLVADQIPILGP--PT--QH 1106

  Fly  1086 LIGSG----LVHLLQLLITRKPNFLDKDIISASCSVWRSQQLMDSKASPGIFDGLISISFVQEMA 1146
            .:..|    |:|:|                   .|:|:..           |.|.:.:..:....
  Rat  1107 RLDRGHARRLLHML-------------------LSLWKDD-----------FQGPVPLQLLLSPR 1141

  Fly  1147 NSADSFRMLETILRSMLQSGAIRADHLNELFMPLFAENWSPKVWCMLSELLQQL---SLSGK-DS 1207
            |                              :.|.|:. .|:.|.:|..||::|   .|.|. :.
  Rat  1142 N------------------------------VGLLADT-RPREWDLLLFLLRELVEKDLMGHLEI 1175

  Fly  1208 EAHYAS-------GDSPEDEAKSHLFMEMLAD 1232
            ||...|       ||..|:  .|.||...||:
  Rat  1176 EACLVSLNEAQWPGDFSEE--LSTLFRLFLAE 1205

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dltNP_728672.1 Codanin-1_C 788..908 CDD:291942 33/128 (26%)
Cdan1XP_038962744.1 PHA03247 <65..296 CDD:223021 53/259 (20%)
Codanin-1_C 787..902 CDD:405884 36/148 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 175 1.000 Domainoid score I3558
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H16324
Inparanoid 1 1.050 201 1.000 Inparanoid score I3702
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D295556at33208
OrthoFinder 1 1.000 - - FOG0007882
OrthoInspector 1 1.000 - - oto96074
orthoMCL 1 0.900 - - OOG6_108154
Panther 1 1.100 - - LDO PTHR28678
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X5837
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1211.970

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