DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment l(2)09851 and rbbp4

DIOPT Version :9

Sequence 1:NP_001260713.1 Gene:l(2)09851 / 46662 FlyBaseID:FBgn0022288 Length:456 Species:Drosophila melanogaster
Sequence 2:XP_017946704.1 Gene:rbbp4 / 496866 XenbaseID:XB-GENE-482002 Length:426 Species:Xenopus tropicalis


Alignment Length:442 Identity:124/442 - (28%)
Similarity:195/442 - (44%) Gaps:66/442 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 AEDDTAEPKAPKEVYLPGTKLADDEELVCDESAYVMLHQASTGAPCLSFDVIPDELGSGRQSFPM 94
            |.||..|.:...|.|....|   :...:.|   .||.|....  |.|:...:||......:.|.:
 Frog     7 AFDDAVEERVINEEYKIWKK---NTPFLYD---LVMTHALEW--PSLTAQWLPDVTRPDGKDFSI 63

  Fly    95 TAYIVAGTQASRAHVNNLIVMKMSNLHKTQDNDGDEDEELEDDQ-------DDVTDREELKKPQM 152
            .. :|.||..|... |:|::..:    :..::|...|....|.:       ..|:.:.|::    
 Frog    64 HR-LVLGTHTSDEQ-NHLVIASV----QLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIE---- 118

  Fly   153 TCALVKHQGCVNRVRARRLGNSVYAASWSELGRVNIWDLTQPLQAVENAQLAKQYEQSEARPVFT 217
              ..:.|:|.|||.|... .|....|:.:....|.::|.|:        ..:|.....|..|...
 Frog   119 --IKINHEGEVNRARYMP-QNPCIIATKTPSSDVLVFDYTK--------HPSKPDPSGECNPDLR 172

  Fly   218 FGGHQQEGFAIDWSPSADGVLATGDCRRDIHVW----TPVEDGTWKVDQRPL-AGHSQSVEDLQW 277
            ..|||:||:.:.|:|:..|.|.:......|.:|    .|.|...  ||.:.: .||:..|||:.|
 Frog   173 LRGHQKEGYGLSWNPNLSGNLLSASDDHTICLWDISAVPKEGKV--VDAKTIFTGHTAVVEDVSW 235

  Fly   278 SPNERSVLASCSVDKTIRIWDCRAS----PQKACMLTCEDAHQSDVNVISWNRNEPFI-ASGGDD 337
            .....|:..|.:.|:.:.|||.|::    |..:.     |||.::||.:|:|....|| |:|..|
 Frog   236 HLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSV-----DAHTAEVNCLSFNPYSEFILATGSAD 295

  Fly   338 GYLHIWDLRQFQSKKPIATFKHHTDHI-TTVEWSPAEATVLASGGDDDQIALWDLAVEKDIDQAV 401
            ..:.:||||..:.|  :.:|:.|.|.| ..|:|||...|:|||.|.|.::.:|||:   .|.:..
 Frog   296 KTVALWDLRNLKLK--LHSFESHKDEIFQQVQWSPHNETILASSGTDRRLNVWDLS---KIGEEQ 355

  Fly   402 DPAQNEDVLNKLPPQLLFIHQGQ-KEIKELHWHPQLPGVLLSTAHSGFNIFR 452
            .|...||.    ||:|||||.|. .:|.:..|:|..|.|:.|.:..  ||.:
 Frog   356 SPEDAEDG----PPELLFIHGGHTAKISDFSWNPNEPWVICSVSED--NIMQ 401

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(2)09851NP_001260713.1 CAF1C_H4-bd 53..120 CDD:289068 15/66 (23%)
WD40 152..>395 CDD:295369 77/253 (30%)
WD40 <172..>447 CDD:225201 89/286 (31%)
WD40 repeat 226..267 CDD:293791 10/45 (22%)
WD40 repeat 272..312 CDD:293791 12/43 (28%)
WD40 repeat 320..357 CDD:293791 13/37 (35%)
rbbp4XP_017946704.1 CAF1C_H4-bd 19..88 CDD:372002 18/82 (22%)
WD40 122..404 CDD:392136 97/307 (32%)
WD40 repeat 128..175 CDD:293791 11/55 (20%)
WD40 repeat 180..224 CDD:293791 11/45 (24%)
WD40 repeat 231..270 CDD:293791 11/43 (26%)
WD40 repeat 276..314 CDD:293791 14/39 (36%)
WD40 repeat 322..372 CDD:293791 23/56 (41%)
WD40 repeat 378..403 CDD:293791 8/26 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D831322at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.