DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(2)09851 and Caf1-55

DIOPT Version :9

Sequence 1:NP_001260713.1 Gene:l(2)09851 / 46662 FlyBaseID:FBgn0022288 Length:456 Species:Drosophila melanogaster
Sequence 2:NP_524354.1 Gene:Caf1-55 / 41836 FlyBaseID:FBgn0263979 Length:430 Species:Drosophila melanogaster


Alignment Length:446 Identity:120/446 - (26%)
Similarity:202/446 - (45%) Gaps:63/446 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 SDSGSDAEDDTAEPKAPKEVYLPGTKLADDEELVCDESAYVMLHQASTGAPCLSFDVIPDELGSG 88
            ||:.:::.||..|.:...|.|....|   :...:.|   .||.|....  |.|:...:||.....
  Fly     5 SDNAAESFDDAVEERVINEEYKIWKK---NTPFLYD---LVMTHALEW--PSLTAQWLPDVTKQD 61

  Fly    89 RQSFPMTAYIVAGTQASRAHVNNLIVMKMSNLHKTQDNDGDEDEELEDDQDDVTDREELKKPQMT 153
            .:.:.:.. ::.||..|... |:|::..:..        ..||.:.:....| .::.|.......
  Fly    62 GKDYSVHR-LILGTHTSDEQ-NHLLIASVQL--------PSEDAQFDGSHYD-NEKGEFGGFGSV 115

  Fly   154 CALVK------HQGCVNRVRARRLGNSVYAASWSELGRVNIWDLTQPLQAVENAQLAKQYEQSEA 212
            |..::      |:|.|||.|... .|:...|:.:....|.::|.|:        ..:|.....|.
  Fly   116 CGKIEIEIKINHEGEVNRARYMP-QNACVIATKTPSSDVLVFDYTK--------HPSKPEPSGEC 171

  Fly   213 RPVFTFGGHQQEGFAIDWSPSADGVLATGDCRRDIHVW----TPVEDGTWKVDQRPL-AGHSQSV 272
            :|.....|||:||:.:.|:|:.:|.|.:......|.:|    ||.|...  :|.:.: .||:..|
  Fly   172 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRV--IDAKNIFTGHTAVV 234

  Fly   273 EDLQWSPNERSVLASCSVDKTIRIWDCR----ASPQKACMLTCEDAHQSDVNVISWNRNEPFI-A 332
            ||:.|.....|:..|.:.|:.:.|||.|    :.|....     |||.::||.:|:|....|| |
  Fly   235 EDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV-----DAHTAEVNCLSFNPYSEFILA 294

  Fly   333 SGGDDGYLHIWDLRQFQSKKPIATFKHHTDHITTVEWSPAEATVLASGGDDDQIALWDLAVEKDI 397
            :|..|..:.:||||..:.|  :.:|:.|.|.|..|:|||...|:|||.|.|.::.:|||:...: 
  Fly   295 TGSADKTVALWDLRNLKLK--LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE- 356

  Fly   398 DQAVDPAQNEDVLNKLPPQLLFIHQGQ-KEIKELHWHPQLPGVLLSTAHSGFNIFR 452
            :|:.:.|::.      ||:|||||.|. .:|.:..|:|..|.::.|.:..  ||.:
  Fly   357 EQSTEDAEDG------PPELLFIHGGHTAKISDFSWNPNEPWIICSVSED--NIMQ 404

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(2)09851NP_001260713.1 CAF1C_H4-bd 53..120 CDD:289068 13/66 (20%)
WD40 152..>395 CDD:295369 78/258 (30%)
WD40 <172..>447 CDD:225201 86/285 (30%)
WD40 repeat 226..267 CDD:293791 10/45 (22%)
WD40 repeat 272..312 CDD:293791 12/43 (28%)
WD40 repeat 320..357 CDD:293791 13/37 (35%)
Caf1-55NP_524354.1 CAF1C_H4-bd 23..92 CDD:403473 16/86 (19%)
WD40 127..408 CDD:421866 94/305 (31%)
WD40 repeat 132..179 CDD:293791 11/55 (20%)
WD40 repeat 184..228 CDD:293791 11/45 (24%)
WD40 repeat 235..274 CDD:293791 11/43 (26%)
WD40 repeat 280..318 CDD:293791 14/39 (36%)
WD40 repeat 324..375 CDD:293791 22/57 (39%)
WD40 repeat 381..406 CDD:293791 7/26 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45456806
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D29930at7147
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.850

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