DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(2)09851 and rbbp7

DIOPT Version :9

Sequence 1:NP_001260713.1 Gene:l(2)09851 / 46662 FlyBaseID:FBgn0022288 Length:456 Species:Drosophila melanogaster
Sequence 2:NP_989285.1 Gene:rbbp7 / 394900 XenbaseID:XB-GENE-487909 Length:425 Species:Xenopus tropicalis


Alignment Length:439 Identity:120/439 - (27%)
Similarity:197/439 - (44%) Gaps:65/439 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 DDTAEPKAPKEVYLPGTKLADDEELVCDESAYVMLHQASTGAPCLSFDVIPDELGSGRQSFPMTA 96
            :||.|.:...|.|....|   :...:.|   .||.|....  |.|:...:||......:.:.: .
 Frog     8 EDTVEERVINEEYKIWKK---NTPFLYD---LVMTHALEW--PSLTVQWLPDVTRPEGKDYAL-H 63

  Fly    97 YIVAGTQASRAHVNNLIVMKMSNLHKTQDNDGDEDEELEDDQ-------DDVTDREELKKPQMTC 154
            ::|.||..|... |:|:|.::    :..::|...|....|.:       ..|:.:.|      |.
 Frog    64 WLVLGTHTSDEQ-NHLVVARV----QIPNDDAQFDASHYDSEKGEFGGFGSVSGKIE------TE 117

  Fly   155 ALVKHQGCVNRVRARRLGNSVYAASWSELGRVNIWDLTQPLQAVENAQLAKQYEQSEARPVFTFG 219
            ..:.|:|.|||.|... .|....|:.:....|.::|.|:        ..:|.....:..|.....
 Frog   118 IKINHEGEVNRARYMP-QNPCIIATKTPSADVLVFDYTK--------HPSKPDPSGDCSPDLRLR 173

  Fly   220 GHQQEGFAIDWSPSADGVLATGDCRRDIHVWT----PVEDGTWKVDQRPL-AGHSQSVEDLQWSP 279
            |||:||:.:.|:.:..|.|.:......:.:|.    |.|...  ||.:.: .|||..|||:.|..
 Frog   174 GHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDISAGPKEGKV--VDAKAIFTGHSAVVEDVAWHL 236

  Fly   280 NERSVLASCSVDKTIRIWDCRAS----PQKACMLTCEDAHQSDVNVISWNRNEPFI-ASGGDDGY 339
            ...|:..|.:.|:.:.|||.|::    |..:.     |||.::||.:|:|....|| |:|..|..
 Frog   237 LHESLFGSVADDQKLMIWDTRSNTTSKPSHSV-----DAHTAEVNCLSFNPYSEFILATGSADKT 296

  Fly   340 LHIWDLRQFQSKKPIATFKHHTDHITTVEWSPAEATVLASGGDDDQIALWDLAVEKDIDQAVDPA 404
            :.:||||..:.|  :.:|:.|.|.|..|.|||...|:|||.|.|.::.:|||:...: :|:.:.|
 Frog   297 VALWDLRNLKLK--LHSFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGE-EQSAEDA 358

  Fly   405 QNEDVLNKLPPQLLFIHQGQ-KEIKELHWHPQLPGVLLSTAHSGFNIFR 452
            ::.      ||:|||||.|. .:|.:..|:|..|.|:.|.:..  ||.:
 Frog   359 EDG------PPELLFIHGGHTAKISDFSWNPNEPWVICSVSED--NIMQ 399

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(2)09851NP_001260713.1 CAF1C_H4-bd 53..120 CDD:289068 15/66 (23%)
WD40 152..>395 CDD:295369 76/252 (30%)
WD40 <172..>447 CDD:225201 85/285 (30%)
WD40 repeat 226..267 CDD:293791 8/45 (18%)
WD40 repeat 272..312 CDD:293791 12/43 (28%)
WD40 repeat 320..357 CDD:293791 13/37 (35%)
rbbp7NP_989285.1 CAF1C_H4-bd 18..87 CDD:372002 18/82 (22%)
WD 1 47..122 15/86 (17%)
WD40 122..402 CDD:392136 93/305 (30%)
WD40 repeat 127..174 CDD:293791 10/55 (18%)
WD 2 128..173 9/53 (17%)
WD40 repeat 179..223 CDD:293791 9/45 (20%)
WD 3 181..217 6/37 (16%)
WD 4 228..269 12/45 (27%)
WD40 repeat 230..269 CDD:293791 11/43 (26%)
WD40 repeat 275..313 CDD:293791 14/39 (36%)
WD 5 275..312 14/38 (37%)
WD 6 318..369 21/57 (37%)
WD40 repeat 319..370 CDD:293791 22/57 (39%)
WD 7 376..403 8/26 (31%)
WD40 repeat 376..401 CDD:293791 8/26 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D831322at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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