DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment l(2)09851 and grwd1

DIOPT Version :10

Sequence 1:NP_610182.3 Gene:l(2)09851 / 46662 FlyBaseID:FBgn0022288 Length:456 Species:Drosophila melanogaster
Sequence 2:NP_989268.3 Gene:grwd1 / 394881 XenbaseID:XB-GENE-986093 Length:466 Species:Xenopus tropicalis


Alignment Length:462 Identity:259/462 - (56%)
Similarity:319/462 - (69%) Gaps:16/462 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 DDGNENISMEV--VEPEDAESDMSSDSGSDAEDDTAEPKAPKEVYLPGTK-LADDEELVCDESAY 63
            :|..|:..||.  .|.||.|.|:..:     |:|..:.|.||.|||||.: |.:.||||.|:.||
 Frog    14 EDEEEDEGMEESGSEDEDDEGDIMEE-----EEDDEKDKGPKRVYLPGMEPLKEGEELVMDQEAY 73

  Fly    64 VMLHQASTGAPCLSFDVIPDELGSGRQSFPMTAYIVAGTQASRAHVNNLIVMKMSNLHKTQDNDG 128
            |:.|||.|||||||||||.|.||..|..:|:|.|:.|||||..|..|.::||||.|||:|.....
 Frog    74 VLYHQAQTGAPCLSFDVIRDTLGENRTDYPLTMYLCAGTQADSAQGNRMLVMKMYNLHRTSKEKK 138

  Fly   129 DEDEELEDDQDDVTDREELKKPQMTCALVKHQGCVNRVRARRLGNSVYAASWSELGRVNIWDLTQ 193
            |:.:....|..:..|.|| ||||:..|:|.|.|.:||:|...:|....||.|||.|:|:|:||.:
 Frog   139 DDSDSESSDSGEEEDEEE-KKPQLELAMVPHYGGINRIRVSTMGEVPVAAVWSEKGQVDIYDLRK 202

  Fly   194 PLQAVENAQLAKQY---EQSEARPVFTFGGHQQEGFAIDWSPSADGVLATGDCRRDIHVWTPVED 255
            .|.||.::|:...:   ||::.:|||:|.||..||||:||||...|.|.||||.::||:|.|.|.
 Frog   203 QLSAVSDSQVLAAFLKEEQAKIKPVFSFSGHMTEGFAMDWSPKTAGRLVTGDCNKNIHLWDPREG 267

  Fly   256 GTWKVDQRPLAGHSQSVEDLQWSPNERSVLASCSVDKTIRIWDCRASPQKACMLTCEDAHQSDVN 320
            |||.|||||..||::|||||||||.|.:|.||||||.:|||||.||:|.||||||...||:||||
 Frog   268 GTWHVDQRPFTGHTKSVEDLQWSPTEATVFASCSVDASIRIWDVRAAPNKACMLTASQAHESDVN 332

  Fly   321 VISWNRNEPFIASGGDDGYLHIWDLRQFQSKKPIATFKHHTDHITTVEWSPAEATVLASGGDDDQ 385
            |||||..||||.||||||.|.||||||||....:|.||.||..||:|||.|.::.|.|:.|.|||
 Frog   333 VISWNHQEPFIVSGGDDGVLKIWDLRQFQKGVSVAKFKQHTAPITSVEWHPTDSGVFAASGADDQ 397

  Fly   386 IALWDLAVEKDIDQAVDPAQNED-VLNKLPPQLLFIHQGQKEIKELHWHPQLPGVLLSTAHSGFN 449
            |..||||||:|.||   .|:.|| .|..:||||||:|||:|:|||||||||.|||::|||.||||
 Frog   398 ITQWDLAVERDQDQ---EAETEDPALAGIPPQLLFVHQGEKDIKELHWHPQCPGVVVSTALSGFN 459

  Fly   450 IFRTISV 456
            :||||||
 Frog   460 VFRTISV 466

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(2)09851NP_610182.3 CAF1C_H4-bd 53..121 CDD:463513 41/67 (61%)
WD40 <156..392 CDD:441893 139/238 (58%)
WD40 repeat 226..267 CDD:293791 25/40 (63%)
WD40 repeat 272..312 CDD:293791 30/39 (77%)
WD40 repeat 320..357 CDD:293791 26/36 (72%)
grwd1NP_989268.3 CAF1C_H4-bd 63..131 CDD:463513 41/67 (61%)
WD40 226..>404 CDD:475233 116/177 (66%)
WD40 repeat 238..279 CDD:293791 25/40 (63%)
WD40 repeat 284..324 CDD:293791 30/39 (77%)
WD40 repeat 332..370 CDD:293791 26/37 (70%)
WD40 repeat 376..417 CDD:293791 23/43 (53%)
WD40 repeat 437..463 CDD:293791 20/25 (80%)

Return to query results.
Submit another query.