DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(2)09851 and rbb4l

DIOPT Version :9

Sequence 1:NP_001260713.1 Gene:l(2)09851 / 46662 FlyBaseID:FBgn0022288 Length:456 Species:Drosophila melanogaster
Sequence 2:NP_997775.1 Gene:rbb4l / 322129 ZFINID:ZDB-GENE-030131-848 Length:426 Species:Danio rerio


Alignment Length:447 Identity:123/447 - (27%)
Similarity:197/447 - (44%) Gaps:81/447 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 APKEVYLPGTKLADD--EELVCDES------------AYVMLHQASTGAPCLSFDVIPDELGSGR 89
            |.||||       ||  ||.|.:|.            ..||.|....  |.|:...:||......
Zfish     2 ADKEVY-------DDAVEERVINEEYKIWKKNTPFLYDLVMTHALEW--PSLTVQWLPDVNRPEG 57

  Fly    90 QSFPMTAYIVAGTQASRAHVNNLIVMKMSNLHKTQDNDGDEDEELEDDQ--------DDVTDREE 146
            :.: :...:|.||..|... |:|::...    :..::|...|....|.:        ..|:.:.|
Zfish    58 KDY-VVHRLVLGTHTSDEQ-NHLVIASA----QIPNDDAQFDASHYDSEKGAEFGGFGSVSGKIE 116

  Fly   147 LKKPQMTCALVKHQGCVNRVRARRLGNSVYAASWSELGRVNIWDLTQPLQAVENAQLAKQYEQSE 211
            ::      ..:.|:|.|||.|... .|....|:.:....|..:|.|:        ..:|.....:
Zfish   117 IE------IKINHEGEVNRARYMP-QNPCIIATKTPTSDVLAFDYTK--------HPSKPDPSGD 166

  Fly   212 ARPVFTFGGHQQEGFAIDWSPSADGVLATGDCRRDIHVW----TPVEDGTWKVDQRPL-AGHSQS 271
            ..|.....|||:||:.:.|:|:..|.|.:......|.:|    .|.|...  ||.:.: .||:..
Zfish   167 CSPDLRLRGHQKEGYGLSWNPNLSGNLLSASDDHTICLWDISGAPKEGKI--VDAKTIFTGHTAV 229

  Fly   272 VEDLQWSPNERSVLASCSVDKTIRIWDCRAS----PQKACMLTCEDAHQSDVNVISWNRNEPFI- 331
            |||:.|.....|:..|.:.|:.:.|||.|::    |..:.     |||.::||.:|:|....|| 
Zfish   230 VEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSV-----DAHTAEVNCLSFNPYSEFIL 289

  Fly   332 ASGGDDGYLHIWDLRQFQSKKPIATFKHHTDHITTVEWSPAEATVLASGGDDDQIALWDLAVEKD 396
            |:|..|..:.:||||..:.|  :.:|:.|.|.|..|:|||...|:|||.|.|.::.:|||:...:
Zfish   290 ATGSADKTVALWDLRNLKLK--LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGE 352

  Fly   397 IDQAVDPAQNEDVLNKLPPQLLFIHQGQ-KEIKELHWHPQLPGVLLSTAHSGFNIFR 452
             :|:.:.|::.      ||:|||||.|. .:|.:..|:|..|.|:.|.:..  ||.:
Zfish   353 -EQSAEDAEDG------PPELLFIHGGHTAKISDFSWNPNEPWVICSVSED--NIMQ 400

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(2)09851NP_001260713.1 CAF1C_H4-bd 53..120 CDD:289068 18/80 (23%)
WD40 152..>395 CDD:295369 76/252 (30%)
WD40 <172..>447 CDD:225201 86/285 (30%)
WD40 repeat 226..267 CDD:293791 10/45 (22%)
WD40 repeat 272..312 CDD:293791 12/43 (28%)
WD40 repeat 320..357 CDD:293791 13/37 (35%)
rbb4lNP_997775.1 CAF1C_H4-bd 18..86 CDD:289068 14/75 (19%)
WD 1 47..123 13/87 (15%)
WD40 repeat 128..175 CDD:293791 10/55 (18%)
WD 2 129..174 9/53 (17%)
WD40 <162..>408 CDD:225201 82/257 (32%)
WD40 <172..403 CDD:295369 81/247 (33%)
WD40 repeat 180..224 CDD:293791 11/45 (24%)
WD 3 182..218 8/37 (22%)
WD 4 229..270 12/45 (27%)
WD40 repeat 231..270 CDD:293791 11/43 (26%)
WD40 repeat 276..314 CDD:293791 14/39 (36%)
WD 5 276..313 14/38 (37%)
WD 6 319..370 21/57 (37%)
WD40 repeat 320..371 CDD:293791 22/57 (39%)
WD 7 377..404 8/26 (31%)
WD40 repeat 377..402 CDD:293791 8/26 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D831322at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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