DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(2)09851 and rbbp4

DIOPT Version :9

Sequence 1:NP_001260713.1 Gene:l(2)09851 / 46662 FlyBaseID:FBgn0022288 Length:456 Species:Drosophila melanogaster
Sequence 2:NP_997760.1 Gene:rbbp4 / 321726 ZFINID:ZDB-GENE-030131-445 Length:424 Species:Danio rerio


Alignment Length:440 Identity:125/440 - (28%)
Similarity:197/440 - (44%) Gaps:63/440 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 AEDDTAEPKAPKEVYLPGTKLADDEELVCDESAYVMLHQASTGAPCLSFDVIPDELGSGRQSFPM 94
            |.||..|.:...|.|....|   :...:.|   .||.|....  |.|:...:||......:.|.:
Zfish     7 AFDDAVEERVINEEYKIWKK---NTPFLYD---LVMTHALEW--PSLTAQWLPDVTRPEGKDFSV 63

  Fly    95 TAYIVAGTQASRAHVNNLIVMKMSNLHKTQDNDGDEDEELEDDQ-------DDVTDREELKKPQM 152
            .. :|.||..|... |:|::..:    :..::|...|....|.:       ..|:.:.|::    
Zfish    64 HR-LVLGTHTSDEQ-NHLVIASV----QLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIE---- 118

  Fly   153 TCALVKHQGCVNRVRARRLGNSVYAASWSELGRVNIWDLTQPLQAVENAQLAKQYEQSEARPVFT 217
              ..:.|:|.|||.|... .|....|:.:....|.::|.|:        ..:|.....|..|...
Zfish   119 --IKINHEGEVNRARYMP-QNPCIIATKTPTSDVLVFDYTK--------HPSKPDPSGECTPDLR 172

  Fly   218 FGGHQQEGFAIDWSPSADGVLATGDCRRDIHVW---TPVEDGTWKVDQRPL-AGHSQSVEDLQWS 278
            ..|||:||:.:.|:|:..|.|.:......|.:|   |..::|. .||.:.: .||:..|||:.|.
Zfish   173 LRGHQKEGYGLSWNPNLRGCLLSASDDHTICLWDISTVPKEGK-IVDAKTIFTGHTAVVEDVSWH 236

  Fly   279 PNERSVLASCSVDKTIRIWDCRAS----PQKACMLTCEDAHQSDVNVISWNRNEPFI-ASGGDDG 338
            ....|:..|.:.|:.:.|||.|::    |..|.     |||.::||.:|:|....|| |:|..|.
Zfish   237 LLHESLFGSVADDQKLMIWDTRSNNTSKPSHAV-----DAHTAEVNCLSFNPYSEFILATGSADK 296

  Fly   339 YLHIWDLRQFQSKKPIATFKHHTDHITTVEWSPAEATVLASGGDDDQIALWDLAVEKDIDQAVDP 403
            .:.:||||..:.|  :.:|:.|.|.|..|:|||...|:|||.|.|.::.:|||:   .|.:...|
Zfish   297 TVALWDLRNLKLK--LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLS---KIGEEQSP 356

  Fly   404 AQNEDVLNKLPPQLLFIHQGQ-KEIKELHWHPQLPGVLLSTAHSGFNIFR 452
            ...||.    ||:|||||.|. .:|.:..|:|..|.|:.|.:..  ||.:
Zfish   357 EDAEDG----PPELLFIHGGHTAKISDFSWNPNEPWVICSVSED--NIMQ 400

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(2)09851NP_001260713.1 CAF1C_H4-bd 53..120 CDD:289068 15/66 (23%)
WD40 152..>395 CDD:295369 78/251 (31%)
WD40 <172..>447 CDD:225201 90/284 (32%)
WD40 repeat 226..267 CDD:293791 10/44 (23%)
WD40 repeat 272..312 CDD:293791 13/43 (30%)
WD40 repeat 320..357 CDD:293791 13/37 (35%)
rbbp4NP_997760.1 CAF1C_H4-bd 19..87 CDD:289068 18/81 (22%)
WD40 122..403 CDD:295369 98/305 (32%)
WD 1 122..162 12/48 (25%)
WD40 repeat 128..175 CDD:293791 11/55 (20%)
WD40 <162..423 CDD:225201 86/256 (34%)
WD 2 175..215 12/39 (31%)
WD40 repeat 180..224 CDD:293791 11/44 (25%)
WD 3 225..265 13/39 (33%)
WD40 repeat 231..265 CDD:293791 10/33 (30%)
WD 4 271..311 16/41 (39%)
WD40 repeat 276..314 CDD:293791 14/39 (36%)
WD 5 315..355 17/42 (40%)
WD40 repeat 320..371 CDD:293791 24/57 (42%)
WD 6 372..412 9/31 (29%)
WD40 repeat 377..402 CDD:293791 8/26 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D831322at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.920

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