DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(2)09851 and lin-53

DIOPT Version :9

Sequence 1:NP_001260713.1 Gene:l(2)09851 / 46662 FlyBaseID:FBgn0022288 Length:456 Species:Drosophila melanogaster
Sequence 2:NP_492552.1 Gene:lin-53 / 172802 WormBaseID:WBGene00003036 Length:417 Species:Caenorhabditis elegans


Alignment Length:452 Identity:123/452 - (27%)
Similarity:200/452 - (44%) Gaps:80/452 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 EDDTAEPKAPKEVYLPGTKLADDEELVCDESAYVMLHQASTGA---PCLSFDVIPDELGSGRQSF 92
            ||.|:|           .::|:||..:..::...:.....|.|   |.||...:||   ..:.:.
 Worm     5 EDGTSE-----------DRVANDEYKIWKKNTPFLYDLVMTHALEWPSLSVQWLPD---VAKDNS 55

  Fly    93 PMTAY-IVAGTQASRAHVNNLIVMKMSNLHKTQDNDGDEDEELEDDQDDVTDREEL--------- 147
            ..|.: ::.||..|... |:|::.|:..        ..:|.:.:..:.| |:|.|.         
 Worm    56 DHTIHRLILGTHTSDEQ-NHLLISKICM--------PTDDAQFDASRYD-TERSEYGGFGAVNGK 110

  Fly   148 KKPQMTCALVKHQGCVNRVRARRLGNSVYAASWSELGRVNIWDLTQPLQAVENAQLAKQYEQSEA 212
            .:|.:.   :.|:|.|||.|.....:::.|.. |....|.|:|..:. .||.        ..:..
 Worm   111 VEPDIR---INHEGEVNRARYMPQKSNIIATK-SPHADVYIFDYLKH-SAVP--------RDNTF 162

  Fly   213 RPVFTFGGHQQEGFAIDWSPSADG-VLATGD----CRRDIHVWTPVEDGTWKVDQRPLAGHSQSV 272
            .|:....||.:||:.:.|:|:.:| :|:..|    |..||:....|.......|  ...||...|
 Worm   163 NPLIRLKGHTKEGYGLSWNPNKEGLILSASDDQTVCHWDINANQNVAGELQAKD--VFKGHESVV 225

  Fly   273 EDLQWSPNERSVLASCSVDKTIRIWDCRASPQKACMLTCEDAHQSDVNVISWNRNEPFI-ASGGD 336
            ||:.|......|..|...||.:.|||.|.|....|:    |||.::||.:::|....|| |:|..
 Worm   226 EDVAWHVLHDGVFGSVGDDKKLLIWDVRTSTPGHCI----DAHSAEVNCLAFNPYSEFILATGSA 286

  Fly   337 DGYLHIWDLRQFQSKKPIATFKHHTDHITTVEWSPAEATVLASGGDDDQIALWDLAVEKDIDQAV 401
            |..:.:||||..:.|  :.:|:.|.|.|..|:|||...|:|||.|.|.::.:|||:...: ||:.
 Worm   287 DKTVALWDLRNLRMK--LHSFESHRDEIFQVQWSPHNETILASSGTDKRLHVWDLSKIGE-DQSA 348

  Fly   402 DPAQNEDVLNKLPPQLLFIHQGQ-KEIKELHWHPQLPGVLLSTAHSGF--------NIFRTI 454
            :.|::.      ||:|||||.|. .:|.:..|:|..|.|:.|.:....        ||:..:
 Worm   349 EDAEDG------PPELLFIHGGHTAKISDFSWNPNEPWVVCSVSEDNILQVWQMADNIYNEV 404

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(2)09851NP_001260713.1 CAF1C_H4-bd 53..120 CDD:289068 16/70 (23%)
WD40 152..>395 CDD:295369 77/248 (31%)
WD40 <172..>447 CDD:225201 88/281 (31%)
WD40 repeat 226..267 CDD:293791 10/45 (22%)
WD40 repeat 272..312 CDD:293791 14/39 (36%)
WD40 repeat 320..357 CDD:293791 12/37 (32%)
lin-53NP_492552.1 CAF1C_H4-bd 16..83 CDD:289068 16/78 (21%)
WD40 <115..>400 CDD:225201 94/312 (30%)
WD40 118..395 CDD:238121 94/301 (31%)
WD40 repeat 124..170 CDD:293791 11/55 (20%)
WD40 repeat 175..219 CDD:293791 11/45 (24%)
WD40 repeat 226..262 CDD:293791 13/39 (33%)
WD40 repeat 268..306 CDD:293791 13/39 (33%)
WD40 repeat 312..363 CDD:293791 23/57 (40%)
WD40 repeat 369..394 CDD:293791 6/24 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D831322at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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