DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CanB2 and guca1c

DIOPT Version :9

Sequence 1:NP_001246192.1 Gene:CanB2 / 46456 FlyBaseID:FBgn0015614 Length:170 Species:Drosophila melanogaster
Sequence 2:XP_002940159.1 Gene:guca1c / 100497028 XenbaseID:XB-GENE-6039675 Length:188 Species:Xenopus tropicalis


Alignment Length:156 Identity:45/156 - (28%)
Similarity:75/156 - (48%) Gaps:22/156 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 SNFDADEIRRL------GKRFRKLDLDNSGALSVDEFMSLPELQ-----QNPLVQRVIDIFDADG 66
            ||..||:...:      ||..::..   ||.||:.||..|..||     .|..:.:|...||.:.
 Frog     4 SNSAADDSNAMELHKWYGKFMKECP---SGQLSLHEFKELLGLQGMNFEANRYIDQVFSTFDMNK 65

  Fly    67 NGEVDFKEFIQGVSQFSVKGDKLSKLRFAFRIYDMDNDGYISNGELFQVLKMMVGNN----LKDT 127
            :|.:||.|||..:: ..::|....||::.|::||.|.:|.|...||..:|..:...|    :...
 Frog    66 DGFIDFLEFIAAIN-LVLRGKIDQKLKWYFKLYDADGNGSIDRKELLSILTAVRAINGHRGMSPE 129

  Fly   128 QLQQIVDKTIGFADKDEDGKISFDEF 153
            :...:|.:.|   |.:.||:::.:||
 Frog   130 EFTSMVFEKI---DVNGDGELTLEEF 152

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CanB2NP_001246192.1 FRQ1 13..154 CDD:227455 45/156 (29%)
guca1cXP_002940159.1 FRQ1 15..160 CDD:227455 41/145 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1271942at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.