DRSC/TRiP Functional Genomics Resources

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Protein Alignment Spn and SAMD3

DIOPT Version :10

Sequence 1:NP_001246578.1 Gene:Spn / 46194 FlyBaseID:FBgn0010905 Length:2148 Species:Drosophila melanogaster
Sequence 2:NP_001264114.1 Gene:SAMD3 / 154075 HGNCID:21574 Length:544 Species:Homo sapiens


Alignment Length:473 Identity:95/473 - (20%)
Similarity:162/473 - (34%) Gaps:162/473 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly  1299 NGAAARDGRIQVNDQIIEVDGKS------LVGVTQAYAASVLRNTSGLVKFQIGRERDPENSEVA 1357
            :|||.    :.:||::::...|.      |:.:.:.|.    :||.||        :.|||.:.|
Human    55 SGAAL----LALNDRMVQQLVKKIGHQAVLMDLIKKYK----QNTQGL--------KSPENPKKA 103

  Fly  1358 QLIRLSLQADR----EKEERLKRQQEE----YLRRTLD---------YSEDSTQPVSANSSVCEG 1405
            .|: :..:|.|    |:.....|..|:    |....||         ....:.:.:.|.|...:.
Human   104 ALV-MQTEAARDYRDEESSSPARHGEQMPSFYPAENLDNGLIDQRVLKQRRNVKQILARSKALQW 167

  Fly  1406 PSSPVQVEHPMEVEA--------THSQEV--------------------------ESLKRLLQE- 1435
            ..|.|..|.|.:|:.        .||..:                          :.:..|||. 
Human   168 TKSYVLPEFPYDVKCMLAEQKCPDHSMRIRIIEFLQADMTKYLEGSLYPSTQQYNDVVNALLQAH 232

  Fly  1436 ---SEMGC---LVK-----------------EEIIQNLKRKLVKLETTGNENELLSERLRQSERE 1477
               .|.||   |.|                 |::|:|   |.......|...:.|:: :|..|.:
Human   233 PFLDEDGCGFFLWKRALKDRFKYVRRPIEDDEQVIRN---KCKFGHRRGQTRKSLAD-IRFDEIK 293

  Fly  1478 LGNIRKEA----ANLQNMLQQSQGQYM-------ALDKKYNKAKRLVRE---------------- 1515
            |..|::||    :.|...::..|.:|:       .:||:.::...:.|:                
Human   294 LVQIKEEAVCFDSELDEHIKWFQQEYVKTEKDWREIDKRMSQTLEIRRKMIGSRTPLKDILKLFP 358

  Fly  1516 -----YQQ-RELDMCHREEFYQQL--LQEKDTEYNALVK-KLKDRVINLEHELQETQRKAGFPVG 1571
                 ||. ||..:..|.:.|::.  :.|..:| |.|.. .:.|..||:  .|||..:.......
Human   359 FLKCPYQMFREFQLLTRTDIYKKTRHILESYSE-NILTSFSVVDNPINI--VLQEKMKHYTDEDM 420

  Fly  1572 LPY--DSATLKLTPQMMRKTPPKPLFHKLETELSDTEISDLSPDGDGVKTATVERKVPVKDELDA 1634
            |.|  .:||..|.|.:....|  .||..:..::.             |.|..:|    ||:..:.
Human   421 LKYMKMTATCLLLPDVFGDDP--SLFVIMNEQVQ-------------VSTPVLE----VKNPFNM 466

  Fly  1635 AVPQHELLDNSINKTKID 1652
            .|.:..|.......||:|
Human   467 EVCEFSLYLERERLTKVD 484

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SpnNP_001246578.1 PDZ_5 1182..1254 CDD:465518
PDZ_neurabin-like 1258..1347 CDD:467252 12/53 (23%)
SMC_N <1344..1606 CDD:481474 73/374 (20%)
CENP-F_leu_zip 1424..1535 CDD:463102 32/195 (16%)
SAM_Neurabin-like 2050..2118 CDD:188911
SAMD3NP_001264114.1 SAM_Samd3 25..90 CDD:188925 8/42 (19%)
Blue background indicates that the domain is not in the aligned region.

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