DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(3)02640 and hmbsb

DIOPT Version :9

Sequence 1:NP_612103.1 Gene:l(3)02640 / 46140 FlyBaseID:FBgn0010786 Length:652 Species:Drosophila melanogaster
Sequence 2:XP_005157626.1 Gene:hmbsb / 338290 ZFINID:ZDB-GENE-050522-491 Length:362 Species:Danio rerio


Alignment Length:328 Identity:174/328 - (53%)
Similarity:216/328 - (65%) Gaps:26/328 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 KVIRVGSRKSELALIQTKHVIGRLQKLYPKQKFEIHTMSTFGDRVLNVSLPKIGEKSLFTRDLED 70
            :|||||:|||:||.|||..|:.:|::|||...|||..|||.||::|:.:|.|||||||||::||:
Zfish    18 RVIRVGTRKSQLARIQTDSVVEKLKELYPDVLFEIVAMSTTGDKILDTALSKIGEKSLFTKELEN 82

  Fly    71 ALRNGGVDFVVHSLKDLPTALPTGMAIGAVLEREDARDALVLRENFKGHTIASLPKGSVIGTSSL 135
            ||....||.||||||||||.||.|..|||||:||:..||:||....||..:.||...||||||||
Zfish    83 ALEKNEVDLVVHSLKDLPTVLPGGFTIGAVLKRENPHDAVVLHPKNKGKRLDSLSNKSVIGTSSL 147

  Fly   136 RRTAQIRRMYPHLTVCDIRGNLNTRLAKLDAADSKFSGIILAQAGLVRMGWMSRISQVLEPTDLL 200
            ||.||:::.:|||...||||||||||.||| .::.||.||||.|||.||||.:||||:|.|.|.:
Zfish   148 RRAAQLKKRFPHLEFKDIRGNLNTRLKKLD-ENNDFSAIILAAAGLKRMGWENRISQILGPEDCM 211

  Fly   201 YAVGQGALAVECRANDDQVLAMLQKLMCLNTTCRILAERSFLKTLGGGCSAPVAVWSNLKGEPLN 265
            |||||||||||.||.|..:|.|:..|...:|....:|||:|||.|.||||.||||.|.:|     
Zfish   212 YAVGQGALAVEVRARDLDILEMVSVLNDSDTALSCIAERAFLKHLEGGCSVPVAVHSEVK----- 271

  Fly   266 GNSQEVGLSLTGAVWSLDGAIEIRNHLACALNEQKLEGDQRK----------------RGAQEAT 314
             |||   |.|||||:||||:..::..:..:.|......:|.|                ..||:|.
Zfish   272 -NSQ---LYLTGAVYSLDGSDSLKETMQTSFNPDTQAEEQEKVDEKVQRLGITALKVPEAAQDAA 332

  Fly   315 SQL 317
            .:|
Zfish   333 MKL 335

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(3)02640NP_612103.1 hemC 6..289 CDD:234612 167/282 (59%)
PBP2_HuPBGD_like 7..296 CDD:270363 167/288 (58%)
hmbsbXP_005157626.1 hemC 17..306 CDD:234612 168/297 (57%)
PBP2_HuPBGD_like 19..298 CDD:270363 167/288 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170589780
Domainoid 1 1.000 246 1.000 Domainoid score I2129
eggNOG 1 0.900 - - E1_COG0181
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H158
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1189095at2759
OrthoFinder 1 1.000 - - FOG0004130
OrthoInspector 1 1.000 - - otm26211
orthoMCL 1 0.900 - - OOG6_101048
Panther 1 1.100 - - LDO PTHR11557
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2873
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1312.710

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