DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(3)02640 and Hmbs

DIOPT Version :9

Sequence 1:NP_612103.1 Gene:l(3)02640 / 46140 FlyBaseID:FBgn0010786 Length:652 Species:Drosophila melanogaster
Sequence 2:NP_038579.2 Gene:Hmbs / 15288 MGIID:96112 Length:361 Species:Mus musculus


Alignment Length:326 Identity:163/326 - (50%)
Similarity:210/326 - (64%) Gaps:24/326 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 KVIRVGSRKSELALIQTKHVIGRLQKLYPKQKFEIHTMSTFGDRVLNVSLPKIGEKSLFTRDLED 70
            :|||||:|||:||.|||..|:..|:.|||..:|||..|||.||::|:.:|.|||||||||::||:
Mouse    19 RVIRVGTRKSQLARIQTDTVVAMLKALYPGIQFEIIAMSTTGDKILDTALSKIGEKSLFTKELEN 83

  Fly    71 ALRNGGVDFVVHSLKDLPTALPTGMAIGAVLEREDARDALVLRENFKGHTIASLPKGSVIGTSSL 135
            ||....||.|||||||:||.||.|..|||:.:||:..||:|....|.|.|:.:||:.|.:|||||
Mouse    84 ALEKNEVDLVVHSLKDVPTILPPGFTIGAICKRENPCDAVVFHPKFIGKTLETLPEKSAVGTSSL 148

  Fly   136 RRTAQIRRMYPHLTVCDIRGNLNTRLAKLDAADSKFSGIILAQAGLVRMGWMSRISQVLEPTDLL 200
            ||.||::|.:|||....|||||||||.|||.. .:||.|:||.|||.||||.:|:.|:|.|.:.:
Mouse   149 RRVAQLQRKFPHLEFKSIRGNLNTRLRKLDEL-QEFSAIVLAVAGLQRMGWQNRVGQILHPEECM 212

  Fly   201 YAVGQGALAVECRANDDQVLAMLQKLMCLNTTCRILAERSFLKTLGGGCSAPVAVWSNLKGEPLN 265
            |||||||||||.||.|..:|.::..|....|..|.:|||:||:.|.||||.||||.:.:|    :
Mouse   213 YAVGQGALAVEVRAKDQDILDLVSVLHDPETLLRCIAERAFLRHLEGGCSVPVAVHTVMK----D 273

  Fly   266 GNSQEVGLSLTGAVWSLDGAIEIRNHLACAL-----NEQKLEGDQR---------KRGAQEATSQ 316
            |.     |.|||.||||||:..::..:...:     .|...|.|.:         .||||.|...
Mouse   274 GQ-----LYLTGGVWSLDGSDSMQETMQATIQVPVQQEDGPEDDPQLVGITARNIPRGAQLAAEN 333

  Fly   317 L 317
            |
Mouse   334 L 334

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(3)02640NP_612103.1 hemC 6..289 CDD:234612 154/282 (55%)
PBP2_HuPBGD_like 7..296 CDD:270363 154/288 (53%)
HmbsNP_038579.2 hemC 18..344 CDD:234612 163/326 (50%)
PBP2_HuPBGD_like 20..299 CDD:270363 154/288 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167844871
Domainoid 1 1.000 239 1.000 Domainoid score I2283
eggNOG 1 0.900 - - E1_COG0181
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H158
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004130
OrthoInspector 1 1.000 - - oto93550
orthoMCL 1 0.900 - - OOG6_101048
Panther 1 1.100 - - LDO PTHR11557
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R556
SonicParanoid 1 1.000 - - X2873
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1211.730

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