DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nup214 and nup98

DIOPT Version :9

Sequence 1:NP_652039.2 Gene:Nup214 / 46091 FlyBaseID:FBgn0010660 Length:1711 Species:Drosophila melanogaster
Sequence 2:NP_956979.2 Gene:nup98 / 777756 ZFINID:ZDB-GENE-040426-1180 Length:1814 Species:Danio rerio


Alignment Length:677 Identity:177/677 - (26%)
Similarity:249/677 - (36%) Gaps:226/677 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly  1072 NKSFG--FGGFTGTGGTVGNTSSSPFSFGGLGSSLGFGGTAAAVPKSEPSSTATTSVATSASTAP 1134
            |||||  |||  ||||.  .|||   :||...|  |||.|        |....:::..|:.:|. 
Zfish     3 NKSFGAPFGG--GTGGF--GTSS---TFGQPNS--GFGAT--------PGGFGSSAFGTTNNTG- 49

  Fly  1135 FGIFSAALAKPSNSEPITTVTSNTTTITSKPTNVIASSSVTDAPSVTTTNAVTSSTDP-IGGLFS 1198
             |:|.....||......:|.:...|:.||......|:|.        |:|::..||:. .|||||
Zfish    50 -GLFGNTQNKPGGLFGSSTFSQPVTSSTSSGFGFGATSG--------TSNSLFGSTNTGGGGLFS 105

  Fly  1199 SVTICKPNTPADTTKPANI--FGGGLSAG---------SFSFGGTIDASKGLFGSTKPVATAPTS 1252
                 :.|......|||..  ||...|:|         |..||||   |..||||:...|..|.:
Zfish   106 -----QQNNAFGANKPAAFGNFGTSTSSGGLFGTTNTASNPFGGT---SGSLFGSSSFTAAPPGT 162

  Fly  1253 VTEANNKTDPISTTPSAISTTTAT-----TTV--------------------SSPAVVPAAV--- 1289
            ..:.|..|...:.....::|:..|     |.:                    ..|:.:|.|.   
Zfish   163 TIKFNPPTGSDTMVKGGVTTSINTKHQCITAMKEYENKSLEELRLEDYQAGRKGPSNLPMAAGTG 227

  Fly  1290 ---TAAVPATSST-TVTSSTAVPGSAFSFSNAFSTLSAGGAAAPTTSASAPLAAKSPTATSTGNN 1350
               .||.|||.|| |....::.|.:.|:|..                      .|:...||||  
Zfish   228 GLFGAAAPATPSTGTGLFGSSAPNTGFNFGQ----------------------NKTTFGTSTG-- 268

  Fly  1351 SSNSVFGGGFAVATSTAAPVASPFQSAAKSPVSSANIFGSIPKAETSVFGGATTAPSNTTAAATP 1415
                      |..|:|.:..|.| |...:....::::|        ..||.|||..:||.:....
Zfish   269 ----------AFGTTTGSLFAQP-QQQQQQQQQNSSLF--------KPFGSATTTQNNTFSFGNT 314

  Fly  1416 DAPPA------GLFASAAISNPSPFGSPTTRAPASGGNIFGQAVKPSVFGQPAQAGDSGGSIFGG 1474
            .:..:      ||||:.|.|                                     ..|.:||.
Zfish   315 SSMVSSSWCTKGLFANTAAS-------------------------------------QAGGLFGN 342

  Fly  1475 GSASTPFG-SSSIFGGGNTQGAVGAPAAGSTSIFGQKV--FGQSSAAAPA--AGGNIFSNPVGSP 1534
            .:.||..| .:.|||..||    |....|:.::||.|.  ||.::.:||:  :|..:|:|   .|
Zfish   343 TNTSTATGFGTGIFGQTNT----GFGNVGTQNLFGNKPAGFGTTTTSAPSFGSGPGLFAN---KP 400

  Fly  1535 QASPFGGGGNSIFGSPATAPPASGGSIFGGGSSSGGFGSFTQTTPAQG-GFGGGFGQGGGGSVAQ 1598
            ..:.......|.||...|   .:||.:||..:::.|.|      |..| |||.|.|.|      |
Zfish   401 TLTLGTNTNTSTFGFSGT---GAGGGLFGNKTAATGLG------PVLGAGFGAGVGTG------Q 450

  Fly  1599 TG-FGSPQAPQQQTTTPGGFGAKPVFGGSPAFGASPTFGGGAT---FGSPKGFGGFGGASPVASP 1659
            |. ||:.|.......:.|.|||    ||         |..||:   ||:|:        .|:|..
Zfish   451 TSLFGNNQKLGSTLGSVGTFGA----GG---------FNTGASTLNFGAPQ--------QPIALT 494

  Fly  1660 PPFGAAAKPAQGNIFETLGGQESGLSF 1686
            .|...||:.|      .|..|.|.|::
Zfish   495 DPSAGAAQQA------VLQQQISALAY 515

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup214NP_652039.2 WD40 <31..>233 CDD:225201
WD40 repeat 38..86 CDD:293791
WD40 repeat 90..131 CDD:293791
WD40 repeat 139..173 CDD:293791
nup98NP_956979.2 Nucleoporin_FG 39..133 CDD:290362 29/108 (27%)
Nucleoporin_FG 217..357 CDD:290362 46/219 (21%)
Nucleoporin_FG 324..>400 CDD:290362 29/119 (24%)
Nucleoporin2 741..881 CDD:282016
Nup96 1333..1626 CDD:288926
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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