DRSC/TRiP Functional Genomics Resources

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Protein Alignment vlc and Dlgap1

DIOPT Version :10

Sequence 1:NP_524868.1 Gene:vlc / 46078 FlyBaseID:FBgn0259978 Length:605 Species:Drosophila melanogaster
Sequence 2:NP_075235.3 Gene:Dlgap1 / 65040 RGDID:620223 Length:992 Species:Rattus norvegicus


Alignment Length:677 Identity:146/677 - (21%)
Similarity:243/677 - (35%) Gaps:220/677 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDRSLDSIGSCSLDVDADSSDISDTSGSLNFP----------------TPVSVRDITREFTANLR 49
            ::|||||:               |.:|.|..|                :.||..::..:|     
  Rat   422 INRSLDSL---------------DPAGLLTSPKFRSRNESYMRAMSTISQVSEMEVNGQF----- 466

  Fly    50 ERCVPNLPPQPQHKTPAYVESRSSELEHMVL--------------SPAIVECDQEPSSNDFDETS 100
                           .:..||..||||...:              |.:.|...::..|.| ||..
  Rat   467 ---------------ESVCESVFSELESQAVEALDLPMPGCFRMRSHSYVRAIEKGCSQD-DECV 515

  Fly   101 AENSQEAP---------EKKPSYLNLACCVNGYSNLTTYDSKIRQDINKSREVSPIRPSTSSLQY 156
            :..|...|         :.....:.|:..|...|.:|||          .:...|:.|.|::   
  Rat   516 SLRSSSPPRTTTTVRTIQSSTGVIKLSSAVEVSSCITTY----------KKTPPPVPPRTTT--- 567

  Fly   157 CKRNHFLATPTLHSMPSPATKCKPIEPNNNSNDSSGNFSSGSGHSNGNGSF---------IKQRV 212
               ..|::.....|..|..      :...:.....|:..|.||.||...|.         |:...
  Rat   568 ---KPFISITAQSSTESAQ------DAYMDGQGQRGDMISQSGLSNSTESLDSMKALTAAIEAAN 623

  Fly   213 ERLYGPGALAQGFYSPKKHGQSPSNAAG-----------RSERGQ-----------VEIDSLQGS 255
            .:::||.:...|           ||||.           ..:|.:           :::|..:.|
  Rat   624 AQIHGPASQHMG-----------SNAAAVTTTTTIATVTTEDRKKDFKKNRCLSIGIQVDDAEES 677

  Fly   256 ELARKFKQLSPSKDYGEFR----KKMQKKC--------SQSTTARIDEPLHSPGLNGDLDL---- 304
            |      :::.||...:|:    :..::||        |.:|..:.|...|. .|...|:.    
  Rat   678 E------KMAESKTSSKFQSVGVQVEEEKCFRRFTRSNSVTTAVQADLDFHD-NLENSLESIEDN 735

  Fly   305 ----PVFRHLSQEFRAQLPTVSPKRGAPRSCMAPDVLLVDNESSPDHGPTDEVDHESTKMDKLAS 365
                |:.|..|::......::........:|.|.|..  |.:..|...|..:...:|...|.|  
  Rat   736 SCPGPMARQFSRDASTSTVSIQGSGNHYHACAADDDF--DTDFDPSILPPPDPWIDSITEDPL-- 796

  Fly   366 EEYISTSNISVEAVV-----KDGNFFLKILKEEQSRLLVLAALAE---KYADALSTNPDISEDTF 422
                       |||.     :||::|||:|:.|:.|:       |   |..:......::.||..
  Rat   797 -----------EAVQRSVCHRDGHWFLKLLQAERDRM-------EGWCKQMEREERENNLPEDIL 843

  Fly   423 GLLRSASGKARLLVSQKMKQFEGLCHNNLNRSPEDKFPTTLDDLQGFWDMVYLQVEHVDSIFADI 487
            |.:|:|.|.|:||::||..||..||..|||.:...: ||: .||.|||||:.|.:|::...|.::
  Rat   844 GKIRTAVGSAQLLMAQKFYQFRELCEENLNPNAHPR-PTS-QDLAGFWDMLQLSIENISMKFDEL 906

  Fly   488 EKLKSNDWKVKAQSVADQPDLHTIPTKTIKPSKVGVSQVKTVGKASSVRVNGSAPPPPNSAAALK 552
            .:||:|:|  |.....|:.:....|....||:|         |.|..:|        ..|..:.:
  Rat   907 HQLKANNW--KQMDPLDKKERRAPPPVPKKPAK---------GPAPLIR--------ERSLESSQ 952

  Fly   553 REAQRKLLLEMKRQ---RREAMTAAAK 576
            |:..||.|:..||.   |:.:.|.:|:
  Rat   953 RQEARKRLMAAKRAASVRQNSATESAE 979

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vlcNP_524868.1 GKAP <381..>496 CDD:460897 43/117 (37%)
Dlgap1NP_075235.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 154..209
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 355..375
GKAP 660..992 CDD:460897 92/370 (25%)
Interaction with DYL2. /evidence=ECO:0000269|PubMed:14760703 665..676 1/10 (10%)
Interaction with DYL2. /evidence=ECO:0000269|PubMed:14760703 687..698 1/10 (10%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 914..980 20/85 (24%)
PDZ-binding 990..992
Blue background indicates that the domain is not in the aligned region.

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