DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment vlc and DLGAP3

DIOPT Version :9

Sequence 1:NP_001163056.1 Gene:vlc / 46078 FlyBaseID:FBgn0259978 Length:605 Species:Drosophila melanogaster
Sequence 2:NP_001073887.1 Gene:DLGAP3 / 58512 HGNCID:30368 Length:979 Species:Homo sapiens


Alignment Length:637 Identity:145/637 - (22%)
Similarity:248/637 - (38%) Gaps:151/637 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 DADSSDISDTSGSLNFPTPVSVRDITREFTANLRERCVPNLPPQ--PQHKTPAYVESRSSELEHM 78
            |.:|.| ||.|...: |..|:.|..||..::..:.|....:||:  |:...|.|  |||  |...
Human   403 DEESGD-SDGSPKTS-PKAVARRFTTRRSSSVDQARINCCVPPRIHPRSSIPGY--SRS--LTTG 461

  Fly    79 VLSPAIVECDQEPSSNDFDETSAENSQEAPEKKPSYLNLACCVNGYSNLTTYDSKIRQDINKSRE 143
            .||..:.:..:....:.|.|..:: :.:|       |:|..|....|:  :|...|:...::..:
Human   462 QLSDELNQQLEAVCGSVFGELESQ-AVDA-------LDLPGCFRMRSH--SYLRAIQAGCSQDDD 516

  Fly   144 VSPI---------RPSTSSLQYCKRNHFLATPTLHSMPSPATKCKP---IEPNNNSNDSSGNFSS 196
            ..|:         ||. ||..:.|     |.|.:    .|.::..|   |...::::.:..:|::
Human   517 CLPLLATPAAVSGRPG-SSFNFRK-----APPPI----PPGSQAPPRISITAQSSTDSAHESFTA 571

  Fly   197 GSGHSNGNGSFIKQRVERLYGPGALAQGF--------YSPKKHGQSPSNAAGRSERGQ------- 246
            ..|.:....|     .:.|.||...|:..        .|||..........||.|...       
Human   572 AEGPARRCSS-----ADGLDGPAMGARTLELAPVPPRASPKPPTLIIKTIPGREELRSLARQRKW 631

  Fly   247 -----VEIDSLQGSEL----ARKFKQLSPSKDYGEFRKKMQKKCSQSTTARIDEPLHSPGLNG-- 300
                 |:::::..|:.    .|:|..:....:  |.:::.:.|.|.|.||.:...|...||.|  
Human   632 RPSIGVQVETISDSDTENRSRREFHSIGVQVE--EDKRRARFKRSNSVTAGVQADLELEGLAGLA 694

  Fly   301 ---------DLDLPVFRHLSQ-EFRAQLPTVSP------------KRGAPRSCMAPDVLLVDNES 343
                     .......||.|: :...:.||.|.            :.|.|.....|     ..:.
Human   695 TVATEDKALQFGRSFQRHASEPQPGPRAPTYSVFRTVHTQGQWAYREGYPLPYEPP-----ATDG 754

  Fly   344 SPDHGPTDEVDHESTKMDKLASEEYISTSNISV------EAVVKDGNFFLKILKEEQSRLLVLAA 402
            ||...|.......:.:.|     .:|...:.|:      ....:||.:|:|:|:.|..:|.....
Human   755 SPGPAPAPTPGPGAGRRD-----SWIERGSRSLPDSGRASPCPRDGEWFIKMLRAEVEKLEHWCQ 814

  Fly   403 LAEKYADALSTNPDISEDTFGLLRSASGKARLLVSQKMKQFEGLCHNNLNRSPEDKFPT-TLDDL 466
            ..|:.|:    :.::.|:....:|||.|..:||:|||::||..||..:::.:   .||. |..||
Human   815 QMEREAE----DYELPEEILEKIRSAVGSTQLLLSQKVQQFFRLCQQSMDPT---AFPVPTFQDL 872

  Fly   467 QGFWDMVYLQVEHVDSIFADIEKLKSNDWKV---KAQSVADQPDLHTIPTKTIKPSKVGVSQVKT 528
            .||||::.|.:|.|...|.::::||:|.||:   |.:.....|    ||.|.::...|.|.:   
Human   873 AGFWDLLQLSIEDVTLKFLELQQLKANSWKLLEPKEEKKVPPP----IPKKPLRGRGVPVKE--- 930

  Fly   529 VGKASSVRVNGSAPPPPNSAAALKREAQ--RKLLLEMKRQ---RREAMTAAA 575
                             .|..::.|:.|  ||.||..||.   |..:.|.:|
Human   931 -----------------RSLDSVDRQRQEARKRLLAAKRAASFRHSSATESA 965

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vlcNP_001163056.1 GKAP 246..575 CDD:281368 88/383 (23%)
DLGAP3NP_001073887.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..20
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 52..95
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 136..169
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 182..291
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 400..429 11/27 (41%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 537..581 8/52 (15%)
GKAP 628..979 CDD:308780 89/381 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 741..790 9/58 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 908..940 8/55 (15%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3971
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000823
OrthoInspector 1 1.000 - - otm41036
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12353
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3941
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
65.990

Return to query results.
Submit another query.